SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8239

Length: 418 nt

UniGene Fasta

>biog2_v2.0_unigene8239
AGTTCTCTAGTATTAAGCTTTAAGCTTCAACAGCCCAGGGTGCCAGGAGGAGGAAATCATGACGGGAGGAGTCGGAATCACAACATATGCAGTGGCACTGGCCATGATAGGCCTGGCAATCTATGTCAGCACAGACCCATTTCATTACAGCCCCATTGCAGACTTCCCCGACTTCAAAACACACAAGGTCGACTTCCCGCCATGGTCGCAGTTTCCTGTGGCCAAGGACCATCAGAACAAACTCCAGAGGTCTGAAATTAAGTTCTTAAACCAAGTCCAGGGACCCGAGAGTCTCGCGTTCGATCCTCAGGGAAGAGGGCCTTACACTGGTGTCGCAGATGGCCGAATCATGTTCTGGGACGGCCAGCAGTGGTCGGAATTCGCTTACACGTCTCCCAACAGGTCGGAGGAGCTGTGC

Ace file of the UniGene biog2_v2.0_unigene8239

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25077	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Strictosidine synthase, putative n=1 Tax=Ricinus communis RepID=B9RJ21_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	strictosidine synthase family protein	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	81%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	NHL repeat	IPR001258	-	-
Sma3		IPR004141	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Strictosidine synthase, conserved region	IPR018119	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRD1

Fln msg: Distance to subject end: 274 aas, your sequence is shorter than subject: 120 - 393

Fln protein: MTGGVGITTYAVALAMIGLAIYVSTDPFHYSPIADFPDFKTHKVDFPPWSQFPVAKDHQNKLQRSEIKFLNQVQGPESLAFDPQGRGPYTGVADGRIMFWDGQQWSEFAYTSPNRSEELC

Protein Length: 121

Fln nts: AGTTCTCTAGTATTAAGCTTTAAGCTTCAACAGCCCAGGGTGCCAGGAGGAGGAAATC_-_ATGACGGGAGGAGTCGGAATCACAACATATGCAGTGGCACTGGCCATGATAGGCCTGGCAATCTATGTCAGCACAGACCCATTTCATTACAGCCCCATTGCAGACTTCCCCGACTTCAAAACACACAAGGTCGACTTCCCGCCATGGTCGCAGTTTCCTGTGGCCAAGGACCATCAGAACAAACTCCAGAGGTCTGAAATTAAGTTCTTAAACCAAGTCCAGGGACCCGAGAGTCTCGCGTTCGATCCTCAGGGAAGAGGGCCTTACACTGGTGTCGCAGATGGCCGAATCATGTTCTGGGACGGCCAGCAGTGGTCGGAATTCGCTTACACGTCTCCCAACAGGTCGGAGGAGCTGTGC

Fln Alignment:

biogeco2_mira_c2965___MTGGVGITTYAVALAMIGLAIYVSTDPFHYSPIADFPDFKTHKVDFPPWSQFPVAKDHQNKLQRSEIKFLNQVQGPESLAFDPQGRGPYTGVADGRIMFWDGQQWSEFAYTSPNRSEELC
B8LRD1_________________MSETVGVRT-VLGVALLGLAIYVSTDPFHLSPIARFPNFKSYAVDSPPWSQLPLPKDDQNRLQKSEIKFLNQVQGPESIAFDPQGRGPYTGVADGRIMFWNGGQWSEFSFTSPNRSEELC

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
41	33	33	33		0.99775
42		33	33	33	0.997749
44		66	33		0.997457
45		66	33		0.997467
301		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain