SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8226

Length: 471 nt

UniGene Fasta

>biog2_v2.0_unigene8226
GGCATAGTCTATTCCGTCTTGGATAAGAAGGATGAGGCAGAGCAGCAGTTTGAGAAGTACCGCAAGCTTGTTCCTGAAGATTTTGAAATGCGAGGGTTACTGGATGAAGTAATGTGGTCAGCAAAGACGGAGTCACATAAGCTATATAAAGAAAGAAAGAAGAAGGAGGAGCTCTTGGCACAAGGTAAAACACCTCAGAAGAATATGAAACAACCCACTACAGGTGTAGAATCTACTACTGTAGTTGGAGAACCTAAAGAATCTGAAGATGGACAGGTTGCAGAGTCGTGAAAATGTAAAACCTATGATACCCCAACAGGGTTGTTGCAGAAACTGGATCCGTAGGTGCATTAAAATGATAAATTACTATTGCTAGGGAGGATCAATTGTGATGAAGGGATGAAGATGATCATGAAATAGTGCTTTTGAAATGTAGAACTGTTCAGAAGAGGTCGAGCACATAAACATTGC

Ace file of the UniGene biog2_v2.0_unigene8226

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene315	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gb\|AAK91373.1\| AT4g39470/F23K16_100 [Arabidopsis thaliana] gb\|AAO42760.1\| At4g39470/F23K16_100 [Arabidopsis thaliana] gb\|AEE87076.1\| tetratricopeptide repeat domain-containing prote	-	-	1.99993e-41	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	protein	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNA1

Fln msg: your sequence is shorter than subject: 97 - 459

Fln protein: GIVYSVLDKKDEAEQQFEKYRKLVPEDFEMRGLLDEVMWSAKTESHKLYKERKKKEELLAQGKTPQKNMKQPTTGVESTTVVGEPKESEDGQVAES*

Protein Length: 98

Fln nts: GGCATAGTCTATTCCGTCTTGGATAAGAAGGATGAGGCAGAGCAGCAGTTTGAGAAGTACCGCAAGCTTGTTCCTGAAGATTTTGAAATGCGAGGGTTACTGGATGAAGTAATGTGGTCAGCAAAGACGGAGTCACATAAGCTATATAAAGAAAGAAAGAAGAAGGAGGAGCTCTTGGCACAAGGTAAAACACCTCAGAAGAATATGAAACAACCCACTACAGGTGTAGAATCTACTACTGTAGTTGGAGAACCTAAAGAATCTGAAGATGGACAGGTTGCAGAGTCGTGA___AAATGTAAAACCTATGATACCCCAACAGGGTTGTTGCAGAAACTGGATCCGTAGGTGCATTAAAATGATAAATTACTATTGCTAGGGAGGATCAATTGTGATGAAGGGATGAAGATGATCATGAAATAGTGCTTTTGAAATGTAGAACTGTTCAGAAGAGGTCGAGCACATAAACATTGC

Fln Alignment:

biogeco2_mira_c2944___GIVYSVLDKKDEAEQQFEKYRKLVPEDFEMRGLLDEVMWSAK
B8LNA1_________________GIIYSILEKKDEASKQFEKYRQLA-KDFPDQNLLDNLM-SAK

SSRs (tot: 1)

Start position	End position	Sequence	Length
148	161	AAAG AAAG AAAG AA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain