SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8205

Length: 352 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8205
GAGAATAACGGGACTTGCTTTCTCTCATGTATTAAATGTTCTTGTATCATCAGGGGCAGATGCGCAGCTTTTCATATGGGGAATAGACAGTTGGGAAAAGCTCAGAAGTAAACCTTTGCAGATTCCACCTGGTAAAGCAGTTTCACCTCAATCAATTACTCGAGTTCAATTTCACCAGGACCAGATACACTTTTTGGCTGTGCATGAAACTCAGCTTGCTATCTATGAAACAGCTAAACTGGAACGCCTCAAACAGTGGGTTCCTCATGAATCTCTTCCTGCTCCAATATCAAATGCTACATACTCGTGTGATAGTCAGCTAATATATGCAAGCTTTATTGATGGTGCTGTT

Ace file of the UniGene biog2_v2.0_unigene8205 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2410	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WV90-1

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 117 - 1119

Fln protein: RITGLAFSHVLNVLVSSGADAQLFIWGIDSWEKLRSKPLQIPPGKAVSPQSITRVQFHQDQIHFLAVHETQLAIYETAKLERLKQWVPHESLPAPISNATYSCDSQLIYASFIDGAV

Protein Length: 118

Fln nts: GAGAATAACGGGACTTGCTTTCTCTCATGTATTAAATGTTCTTGTATCATCAGGGGCAGATGCGCAGCTTTTCATATGGGGAATAGACAGTTGGGAAAAGCTCAGAAGTAAACCTTTGCAGATTCCACCTGGTAAAGCAGTTTCACCTCAATCAATTACTCGAGTTCAATTTCACCAGGACCAGATACACTTTTTGGCTGTGCATGAAACTCAGCTTGCTATCTATGAAACAGCTAAACTGGAACGCCTCAAACAGTGGGTTCCTCATGAATCTCTTCCTGCTCCAATATCAAATGCTACATACTCGTGTGATAGTCAGCTAATATATGCAAGCTTTATTGATGGTGCTGTT

Fln Alignment:

biogeco2_mira_c2912___RITGLAFSHVLNVLVSSGADAQLFIWGIDSWEKLRSKPLQIPPGKAVSPQSITRVQFHQDQIHFLAVHETQLAIYETAKLERLKQWVPHESLPAPISNATYSCDSQLIYASFIDGAV
Q0WV90-1_______________RITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRES-AAPITHATFSCDSQLIYTSFMDATI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
79	66		33		0.997452
133	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain