SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8146

Length: 503 nt

UniGene Fasta

>biog2_v2.0_unigene8146
GAAGTATGAACCCTCAAAGTCTTTTAATCTTGACATGGCAGCCTCTAGAAGTTTCATGCTATCACAGGATTCAACAGAATCTCGATCCATGTCAGCAGAGTTGGATCATTTGCAGCAGGCATGTCAATCTGGAGAAAAGCAGTGTAGTTCTTCACAAGAAATGAATGCTTCCTCTGATACTGGTGGAAATGGGCAACAGAATTGGCATGTGGAATCCAATAAACCAGATGCAGAACAGATTGAAGCATATAGGGCATCATTTGGGTTCAGTGCTGATGAAGTTACAACTTCTAATTGTGAGCTTTCAGAGGTTCTAGGGGATAGCCTTGTGATATCTCCCTTTGGAGCACAGAAATCATATGGTGCAGATTTTGCCACATTTGACAAGAGAAGTATGAAGTCAGAAATGCAGACAGCACGGTTAGCTTTATTTGATTCTGCAAATATATCTTCATCAATGGATTGCAAAGCAAATGCTAACCCAGATTATTATAGAGAGTCAG

Ace file of the UniGene biog2_v2.0_unigene8146

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene57	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	uncharacterized protein at1g76660-like	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQG5

Fln msg: STOP codon was not found. Distance to subject end: 28 aas, your sequence is shorter than subject: 167 - 378

Fln protein: KYEPSKSFNLDMAASRSFMLSQDSTESRSMSAELDHLQQACQSGEKQCSSSQEMNASSDTGGNGQQNWHVESNKPDAEQIEAYRASFGFSADEVTTSNCELSEVLGDSLVISPFGAQKSYGADFATFDKRSMKSEMQTARLALFDSANISSSMDCKANANPDYYRES

Protein Length: 168

Fln nts: GAAGTATGAACCCTCAAAGTCTTTTAATCTTGACATGGCAGCCTCTAGAAGTTTCATGCTATCACAGGATTCAACAGAATCTCGATCCATGTCAGCAGAGTTGGATCATTTGCAGCAGGCATGTCAATCTGGAGAAAAGCAGTGTAGTTCTTCACAAGAAATGAATGCTTCCTCTGATACTGGTGGAAATGGGCAACAGAATTGGCATGTGGAATCCAATAAACCAGATGCAGAACAGATTGAAGCATATAGGGCATCATTTGGGTTCAGTGCTGATGAAGTTACAACTTCTAATTGTGAGCTTTCAGAGGTTCTAGGGGATAGCCTTGTGATATCTCCCTTTGGAGCACAGAAATCATATGGTGCAGATTTTGCCACATTTGACAAGAGAAGTATGAAGTCAGAAATGCAGACAGCACGGTTAGCTTTATTTGATTCTGCAAATATATCTTCATCAATGGATTGCAAAGCAAATGCTAACCCAGATTATTATAGAGAGTCAG

Fln Alignment:

biogeco2_mira_c2822___EPSKSFNLDMAASRSFMLSQD---STESRSMSAELDHLQQACQSGEKQ---------------CSSSQEMNASSD-------------TGGNGQQNWHVESNKPDAEQIEAYRASFGFSADEVTTSNCELSEVLGDSLVISPFGAQKSYGADFATFDKRSMKSEMQTA
B8LQG5_________________EPINLFNQERETSWTSILSQDRDASLSATSLDFHLNHVHRPCQSVWRQRGGELCNPTREEGVCCISSENMILERDMETDRCSTSEIHTSGKDIVIKFPIKSSNPEVEPLEANRASFELVNDEITNASGGLSEILMDNFLVSSFGEQKLFEAESSTSDKTHVKEEIHMA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain