SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8085

Length: 540 nt

UniGene Fasta

>biog2_v2.0_unigene8085
TATGTTGTTACCCAGGTGTTCCAGATAGATGTAAAGCGGTCAAAATGGTGGGATCTTTCAGTCCTATTCAGTATGATAATCATATATCGCATTATCTTTCTTGTGATGATCAAGATCAGTGAAGACGTTACTCCATGGATCAGAGGGTTTATTGCCAGAAGAACCCTAAAAAAAGCAGAACGTGTCGATGACAACTGTGCAACCTTTGAGGCCAGGATCATCTCCCCTGCTTCATCCCACACCCTCGCATGCTCGTCTGGATTCTTCTCCATCACTAAACACCTCTGTTTATCAACCCGACCAACAATCGCATGCTCGTCTGAATTCTCATCTGGATTCTTCTCCATCACTAAATACCTTTGTTTATCAACCCGACCAACAATAGTTTATTTATTTATTTTCTGATAAATTTAGTAGCAAAGAAAACAACAGCACATGGATTTCAGTGGAGTTTGTAAAAGCAGGCCCGGATTCTTCTGGTAGCTATCCATGAATTCTCGTATGCAACCTCAACAACATGTATTGATTATACTTGTAGTT

Ace file of the UniGene biog2_v2.0_unigene8085

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2492	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_39.assembly12x (Fragment) n=3 Tax=rosids RepID=D7T7C0_VITVI	-	-	76%
FL-Next	sp=ABC transporter G family member 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	abc transporter g family member 11	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	85%
Blast2go	cutin transport	GO:0080051	Biological Process	85%
Blast2go	organic phosphonate transmembrane-transporting ATPase activity	GO:0015416	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	fatty acid transporter activity	GO:0015245	Molecular Function	85%
Blast2go	external side of plasma membrane	GO:0009897	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8RXN0

Fln msg: your sequence is shorter than subject: 135 - 703

Fln protein: YVVTQVFQIDVKRSKWWDLSVLFSMIIIYRIIFLVMIKISEDVTPWIRGFIARRTLKKAERVDDNCATFEARIISPASSHTLACSSGFFSITKHLCLSTRPTIACSSEFSSGFFSITKYLCLSTRPTIVYLFIF*

Protein Length: 136

Fln nts: TATGTTGTTACCCAGGTGTTCCAGATAGATGTAAAGCGGTCAAAATGGTGGGATCTTTCAGTCCTATTCAGTATGATAATCATATATCGCATTATCTTTCTTGTGATGATCAAGATCAGTGAAGACGTTACTCCATGGATCAGAGGGTTTATTGCCAGAAGAACCCTAAAAAAAGCAGAACGTGTCGATGACAACTGTGCAACCTTTGAGGCCAGGATCATCTCCCCTGCTTCATCCCACACCCTCGCATGCTCGTCTGGATTCTTCTCCATCACTAAACACCTCTGTTTATCAACCCGACCAACAATCGCATGCTCGTCTGAATTCTCATCTGGATTCTTCTCCATCACTAAATACCTTTGTTTATCAACCCGACCAACAATAGTTTATTTATTTATTTTCTGA___TAAATTTAGTAGCAAAGAAAACAACAGCACATGGATTTCAGTGGAGTTTGTAAAAGCAGGCCCGGATTCTTCTGGTAGCTATCCATGAATTCTCGTATGCAACCTCAACAACATGTATTGATTATACTTGTAGTT

Fln Alignment:

biogeco2_mira_c2720___YVVTQVFQIDVKRSKWWDLSVLFSMIIIYRIIFLVMIKISEDVTPWIRGFIARRTLKKAERVDDNCATFEARIISPASSHTLA
Q8RXN0_________________YVLENVFQIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIARRRMKQKNGTQNTTVAPDGLTQSPSLRNYIA

SSRs (tot: 1)

Start position	End position	Sequence	Length
386	400	TTTA TTTA TTTA TTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain