SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8068

Length: 397 nt

UniGene Fasta

>biog2_v2.0_unigene8068
CACCGATGTCGATGTCCATGTCGATGTCGGACATGGTTTTGTCGGTCTTCGCCGGTGCCTGGGGAGGCAAGGGTTTAGTCGACAATACTGGCGGCACCGACTGCTCTCTGGACGACATTCTTAACAATGTTTGCTCTTACAGCTCTAAGAATAATCGCAGATCGGACTTTCAGGATTCCTCGTCGCCGGAAAAGCAACCTCCTCCTAAGCGGAAGAAGTCTTCTGCCTCCAACTCCCCCTCCGTTTCGAAGAAGCGCAAAGGCAAGTCCACTAACCCTATCCAATCATTGGCCGATGCTCTTGTCGGATTTTCTGAGATGTATGCCAGAATCGAGATCGCCAAAATGGAGATGTTCACCAAGCTTGTTCTAGAGCTCGCTAAACTCCGCACTAAAAG

Ace file of the UniGene biog2_v2.0_unigene8068

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3777	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	aspartate glutamate uridylate kinase-like protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	small molecule biosynthetic process	GO:0044283	Biological Process	64%
Blast2go	cellular nitrogen compound biosynthetic process	GO:0044271	Biological Process	64%
Blast2go	primary metabolic process	GO:0044238	Biological Process	64%
Blast2go	transferase activity	GO:0016740	Molecular Function	64%
Blast2go	cytoplasm	GO:0005737	Cellular Component	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8S6

Fln msg: STOP codon was not found. Distance to subject end: 14 aas,

Fln protein: MSMSMSMSDMVLSVFAGAWGGKGLVDNTGGTDCSLDDILNNVCSYSSKNNRRSDFQDSSSPEKQPPPKRKKSSASNSPSVSKKRKGKSTNPIQSLADALVGFSEMYARIEIAKMEMFTKLVLELAKLRTK

Protein Length: 131

Fln nts: CACCG_-_ATGTCGATGTCCATGTCGATGTCGGACATGGTTTTGTCGGTCTTCGCCGGTGCCTGGGGAGGCAAGGGTTTAGTCGACAATACTGGCGGCACCGACTGCTCTCTGGACGACATTCTTAACAATGTTTGCTCTTACAGCTCTAAGAATAATCGCAGATCGGACTTTCAGGATTCCTCGTCGCCGGAAAAGCAACCTCCTCCTAAGCGGAAGAAGTCTTCTGCCTCCAACTCCCCCTCCGTTTCGAAGAAGCGCAAAGGCAAGTCCACTAACCCTATCCAATCATTGGCCGATGCTCTTGTCGGATTTTCTGAGATGTATGCCAGAATCGAGATCGCCAAAATGGAGATGTTCACCAAGCTTGTTCTAGAGCTCGCTAAACTCCGCACTAAAAG

Fln Alignment:

biogeco2_mira_c2692___DMVLSVFAGAWGGKGLVDNTGGTDCSLDDILNNVCSYSSKNNRRSDFQDXXXXXXXXXXXXXXXXXXXXXXXXXXRKGKSTNPIQSLADALVGFSEMYARIEIAKMEMFTKLVLELAKLRTK
D5A8S6_________________DMVLSVFAGADRGKGLVDNTGGVDCSLDDILNNVCSYSSKNNRRLDFQDSSSPEKQPPPKRKKSSASNSPSVSEKRKGKSTNPIQSLADALVGFSEVYARIEIAKMEMFTKLVLELAKLRTK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
316	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain