SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8061

Length: 405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene8061
CGTAGAAAATTGTGAACCCTTTGCTGAAGATTTGTGGAAAACTTTCAGAATTAATGGATTGACATTCCATGGTGTGAAGCTTTGTGCGCGGTGCAAGGTGCCTACTGTGAATCAAGAAACAGGAATTGCAGGAGCTGAACCGACTGAAACCTTGTCAAAATTTAGATCTGGCAATATCTTATTCTCAGGAAAGAGAAAACGTGGAGAGGTTTTCTTTGGACAGAATTTGATTTGTGAGGAATCATTGAAGCCTAAAGCTGGAAAAGAAAAACCATCAGTGTGGGCGATTCAATATATGTTCTCAAGATGGCTAGCTCATCGGGAGAAGCAGCTGCATGATAGAGTTAAAACACTGCACTTTTATAAGAATAACATGTTAGTTTTTATAAGTAGTTACCATAGTCC

Ace file of the UniGene biog2_v2.0_unigene8061 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1471	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	molybdenum cofactor sulfurase-like protein 1 [Oryza sativa Japonica Group]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	molybdenum cofactor sulfurase family protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	76%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	76%
Blast2go	Mo-molybdopterin cofactor sulfurase activity	GO:0008265	Molecular Function	76%
Blast2go	molybdenum ion binding	GO:0030151	Molecular Function	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Molybdenum cofactor sulfurase, C-terminal	IPR005302	-	0.0	-
Sma3	MOSC, N-terminal beta barrel	IPR005303	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM27

Fln msg: STOP codon was not found. Distance to subject end: 27 aas, your sequence is shorter than subject: 134 - 324

Fln protein: VENCEPFAEDLWKTFRINGLTFHGVKLCARCKVPTVNQETGIAGAEPTETLSKFRSGNILFSGKRKRGEVFFGQNLICEESLKPKAGKEKPSVWAIQYMFSRWLAHREKQLHDRVKTLHFYKNNMLVFISSYHS

Protein Length: 135

Fln nts: CGTAGAAAATTGTGAACCCTTTGCTGAAGATTTGTGGAAAACTTTCAGAATTAATGGATTGACATTCCATGGTGTGAAGCTTTGTGCGCGGTGCAAGGTGCCTACTGTGAATCAAGAAACAGGAATTGCAGGAGCTGAACCGACTGAAACCTTGTCAAAATTTAGATCTGGCAATATCTTATTCTCAGGAAAGAGAAAACGTGGAGAGGTTTTCTTTGGACAGAATTTGATTTGTGAGGAATCATTGAAGCCTAAAGCTGGAAAAGAAAAACCATCAGTGTGGGCGATTCAATATATGTTCTCAAGATGGCTAGCTCATCGGGAGAAGCAGCTGCATGATAGAGTTAAAACACTGCACTTTTATAAGAATAACATGTTAGTTTTTATAAGTAGTTACCATAGTCC

Fln Alignment:

biogeco2_mira_c2684___VENCEPFAEDLWKTFRINGLTFHGVKLCARCKVPTVNQETGIAGAEPTETLSKFRSGNILFSGKRKRGEVFFGQNLICEESLKPKAGKEK-----PSVWAIQYMFSRW
A9NM27_________________VENCEPFAEDLWKTLRINGLTFHGVKLCARCKVPTVNQETGIPGNEPAETLSKFRSGDILFSGKKKRGEVFFGQNLICEESLNPKVCKAKTINVGDSVYVLK-MASSW

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
233		50		50	1.0
271		50	50		1.0
286		50		50	1.0
287		25	75		0.996473
288		25		75	0.996473
289	25			75	0.996473
320		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain