SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene8019

Length: 565 nt

UniGene Fasta

>biog2_v2.0_unigene8019
TAAGATTGCAGCAGAGGAAGGTGGACCAGAAACTTTTCGTGCTGTTTTTATTCGCGCTCCTGCTATTCTAGAGGCAGGTCCATCTGTTGAAGTTCTAGCTGAATATACCATTCTCTCAAAGGAATCAACGTCTACCATTGAAAACATGGAGAATGAGGGACAATATCAAGCAGGAGAAAAAGTTATTGTAGCTGTAAAGCAGGGGAATTTACTGGCAACAGCTTTTCATCCAGAGTTGACATCAGATACTCGTTGGCACAGCTATTTTTTGAAGATGCTAAGTGAGAATGGAGATCAAAGCTTGGTACCTGTCGAAGTAAAGCAAAGTCCAGAAAATTCTGTGTCATCTCCCCAACTTAGAGATCTCCCAATTTTTCGACAAACAGAATTACTAAGTTTTGAGCTATGAAATTTGTGTAGCTTCCTTGATGACTGAATTCTTTCGTCCTAATTGGATATTCTTGTTAATTTCAAATGCTATTTGTTGCAAATTGATAATAATTCGTTCTCTTTAGTGTTGGTAATAGAGATTCATTTACTGTTGAATCTTCACTTCATATTGTCT

Ace file of the UniGene biog2_v2.0_unigene8019

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18120	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	putative pyridoxine biosynthesis protein [Nicotiana tabacum]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	glutamine amidotransferase subunit pdxt	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutaminase.	EC:3.5.1.2	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	77%
Blast2go	Arginine and proline metabolism	00330	77%
Blast2go	D-Glutamine and D-glutamate metabolism	00471	77%
Blast2go	Nitrogen metabolism	00910	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	vitamin B6 biosynthetic process	GO:0042819	Biological Process	77%
Blast2go	glutaminase activity	GO:0004359	Molecular Function	77%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	77%
Blast2go	cytosol	GO:0005829	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutamine amidotransferase subunit PdxT	IPR002161	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNA7

Fln msg: your sequence is shorter than subject: 136 - 263

Fln protein: KIAAEEGGPETFRAVFIRAPAILEAGPSVEVLAEYTILSKESTSTIENMENEGQYQAGEKVIVAVKQGNLLATAFHPELTSDTRWHSYFLKMLSENGDQSLVPVEVKQSPENSVSSPQLRDLPIFRQTELLSFEL*

Protein Length: 137

Fln nts: TAAGATTGCAGCAGAGGAAGGTGGACCAGAAACTTTTCGTGCTGTTTTTATTCGCGCTCCTGCTATTCTAGAGGCAGGTCCATCTGTTGAAGTTCTAGCTGAATATACCATTCTCTCAAAGGAATCAACGTCTACCATTGAAAACATGGAGAATGAGGGACAATATCAAGCAGGAGAAAAAGTTATTGTAGCTGTAAAGCAGGGGAATTTACTGGCAACAGCTTTTCATCCAGAGTTGACATCAGATACTCGTTGGCACAGCTATTTTTTGAAGATGCTAAGTGAGAATGGAGATCAAAGCTTGGTACCTGTCGAAGTAAAGCAAAGTCCAGAAAATTCTGTGTCATCTCCCCAACTTAGAGATCTCCCAATTTTTCGACAAACAGAATTACTAAGTTTTGAGCTATGA___AATTTGTGTAGCTTCCTTGATGACTGAATTCTTTCGTCCTAATTGGATATTCTTGTTAATTTCAAATGCTATTTGTTGCAAATTGATAATAATTCGTTCTCTTTAGTGTTGGTAATAGAGATTCATTTACTGTTGAATCTTCACTTCATATTGTCT

Fln Alignment:

biogeco2_mira_c2603___KIAAEEGGPETFRAVFIRAPAILEAGPSVEVLAEYTILSKEST---STIENMENEGQYQAGEKVIVAVKQGNLLATAFHPELTSDTRWHSYFLKMLSENGDQSLVPVEVKQSPENSVSSPQLRDLPIFRQTELLSFEL
A9NNA7_________________KIAAEEGGPETFRAVFIRAPAILEAGPSVEVLAEYTLLSNESTKFCSTIENTENEGQCQTGQKVIVAVKQGNLLATAFHPELTSDTRWHSYFLKMLGENGHQSLVPVKVKQDPENSLSSSQIRDLPIFQQTEVLSFEL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
250	40	60			1.0
252		60	40		1.0
254			40	60	1.0
301	33		66		0.997471
315	50		50		1.0
393			33	66	0.997459
449	33		66		0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain