SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7957

Length: 554 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene7957
ACAGGCTCCAAGTCGACAATGCCTTCTACCCCGTTGGATGAAGACTCAGAGACCTTCATCAGACAGAGATTACAAGACCTGGCTGACAGCCTGGAGCTGCCACCTGATTATCTGGCTGAACTGCCCAATGATCTTCGTCTCGATCTGAATGATGCAGCTTTTGAGCTTGCAAATGGACCCCTGAAAGAAGAGTGTGGTGAGAAGTTTGGAGAAATATTAATGAAGCTTTCTCAAGCATGGGAGAGAGCAGATACACAGGCCACTGCTGAAATTGCAAGTAGTTTTATCTCTTTTCAGGGTTCTTTCACAGAAAATGTTAAGTTTGCACTTGGAAAGCGTTTAATACGTGCTGGAAGACGCTTTGCATCAATGGGACAATATGGTCAAGGGGAGCTGCGGAAGATTGCAAAATCAATGGTTGCAGCTGGGGAAGCTTTGTCTGCAGGGTCTGCAAGGACAGCAGATGAGCAAAAACTATCGATCAAGCACAGACACTGAAGTTTGGAAGTTTGCAAGTGGAGTTAACTTCCAAACGGGCATACATTGGTTCCATT

Ace file of the UniGene biog2_v2.0_unigene7957 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2134	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	ammonium transporter	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	69%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2D6

Fln msg: Overlapping hits, possible frame ERROR between 474 and 471, Distance to subject end: 72 aas, your sequence is shorter than subject: 185 - 321

Fln protein: TGSKSTMPSTPLDEDSETFIRQRLQDLADSLELPPDYLAELPNDLRLDLNDAAFELANGPLKEECGEKFGEILMKLSQAWERADTQATAEIASSFISFQGSFTENVKFALGKRLIRAGRRFASMGQYGQGELRKIAKSMVAAGEALSAGSARTADExxxIDQAQTLKFGSLQVELTSKRAYIGSI

Protein Length: 186

Fln nts: ACAGGCTCCAAGTCGACAATGCCTTCTACCCCGTTGGATGAAGACTCAGAGACCTTCATCAGACAGAGATTACAAGACCTGGCTGACAGCCTGGAGCTGCCACCTGATTATCTGGCTGAACTGCCCAATGATCTTCGTCTCGATCTGAATGATGCAGCTTTTGAGCTTGCAAATGGACCCCTGAAAGAAGAGTGTGGTGAGAAGTTTGGAGAAATATTAATGAAGCTTTCTCAAGCATGGGAGAGAGCAGATACACAGGCCACTGCTGAAATTGCAAGTAGTTTTATCTCTTTTCAGGGTTCTTTCACAGAAAATGTTAAGTTTGCACTTGGAAAGCGTTTAATACGTGCTGGAAGACGCTTTGCATCAATGGGACAATATGGTCAAGGGGAGCTGCGGAAGATTGCAAAATCAATGGTTGCAGCTGGGGAAGCTTTGTCTGCAGGGTCTGCAAGGACAGCAGATGAGxxxxxxxxxATCGATCAAGCACAGACACTGAAGTTTGGAAGTTTGCAAGTGGAGTTAACTTCCAAACGGGCATACATTGGTTCCATT

Fln Alignment:

biogeco2_mira_c2495___TPLDEDSETFIRQRLQDLADSLELPPDYLAELPNDLRLDLNDAAFELANGPLKEECGEKFGEILMKLSQAWERADTQATAEIASSFISFQGSFTENVKFALGKRLIRAGRRFASMGQYGQGELRKIAKSMVAAGEALSAGSARTADEQxTIDQAQTLKFGSLQVELTSKRAYIGSI
A9P2D6_________________TPLDEESESFIRQKLQDLADSLVLPPDYLAELPNDLRLDLNDAAFELANGPLKEECGEKFGELLMKLSQAWEKADTRATAEIASSFLYFQGSLTENVKFALGKRLIRAGRRFASMGQYGQGELQKIAKSMVTAGEAMSARSARAIDEQxPIDQARTLKFGSLEVELTSKQAYIGSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain