SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7955

Length: 895 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene7955 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15397	51/52
SustainPine v2.0	sp_v2.0_unigene61418	1/52

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L34, putative [Solanum demissum] gb\|ABO92971.1\| putative ribosomal protein L34e [Solanum tuberosum]	-	-	8.00141e-43	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	60s ribosomal protein l34	-	-	0.0	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L34Ae	IPR008195	-	0.0	-
Sma3	Ribosomal protein L34e, conserved site	IPR018065	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
250	33			66	0.997452
274	66			33	0.997452
312		66		33	0.997453
622	14		85		1.0
794	90	10			0.999898
843	23			76	1.0
844	7	15	76		0.999983
846	84	15			0.999986
852	70	10			0.999998
853	70	30			1.0
855	10	90			0.90298
856	20	80			0.999996
869		20	80		0.995493
870	80	20			0.995493
871		20		80	0.995493
872		20		80	0.995493
874			80	20	0.995495
896	66	33			0.997455
897	66	33			0.997455
899			66	33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain