SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7947

Length: 467 nt

UniGene Fasta

>biog2_v2.0_unigene7947
TGGCCTGGCTCCACCACAGCTGCAACCCCCGAATTATTCACCGGAATGTAAGTTCAAACTGCATTTTATTGGATGAAAATGATGAGGCAAAGATAACAGATTTTGGGTTGGCTCGGTTGATGAATCCTGTCGATACTCATCTTAGTACTTTTATCAATGGTGATTTTGGCGACTTGGGTTATGTCGCACCAGAATACATGAGCACCTTGGTTGCTACATTGAAAGGGGATGTCTATAGTTTTGGAGTAGTACTTCTAGAGTTGGTTACCAGACAGAAACCTATTGAAGTTACAAATGTACAGGAAGCTTTAAGGGAAATTTAGTTGAGTGGATCAGTCATCTTTCAAAAAATGGTCTCGTTCAAGAAGCCATTGACAAATCTTTAATTGGCAGAGGACAAGATGATGAGCTTCTCCAGGTTCTGAAGGTGGCTTGTGCTTGTGTTCTATCCCCTCATAAGGAGAGAC

Ace file of the UniGene biog2_v2.0_unigene7947

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23127	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein kinase [Oryza sativa Japonica Group] gb\|AAV32131.1\| putative systemin receptor SR160 [Oryza sativa Japonica Group] gb\|EEE63733.1\| hypothetical protein OsJ_18551 [Oryza sativa Japonica Group]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	probably inactive leucine-rich repeat receptor-like protein kinase at5g48380-like	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM41

Fln msg: Overlapping hits, possible frame ERROR between 314 and 308, Distance to subject end: 46 aas, your sequence is shorter than subject: 155 - 613

Fln protein: AWLHHSCNPRIIHRNVSSNCILLDENDEAKITDFGLARLMNPVDTHLSTFINGDFGDLGYVAPEYMSTLVATLKGDVYSFGVVLLELVTRQKPIEVTNVQExxxxNLVEWISHLSKNGLVQEAIDKSLIGRGQDDELLQVLKVACACVLSPHKER

Protein Length: 156

Fln nts: TGGCCTGGCTCCACCACAGCTGCAACCCCCGAATTATTCACCGGAATGTAAGTTCAAACTGCATTTTATTGGATGAAAATGATGAGGCAAAGATAACAGATTTTGGGTTGGCTCGGTTGATGAATCCTGTCGATACTCATCTTAGTACTTTTATCAATGGTGATTTTGGCGACTTGGGTTATGTCGCACCAGAATACATGAGCACCTTGGTTGCTACATTGAAAGGGGATGTCTATAGTTTTGGAGTAGTACTTCTAGAGTTGGTTACCAGACAGAAACCTATTGAAGTTACAAATGTACAGGAAxxxxxxxxxxxxAATTTAGTTGAGTGGATCAGTCATCTTTCAAAAAATGGTCTCGTTCAAGAAGCCATTGACAAATCTTTAATTGGCAGAGGACAAGATGATGAGCTTCTCCAGGTTCTGAAGGTGGCTTGTGCTTGTGTTCTATCCCCTCATAAGGAGAGAC

Fln Alignment:

biogeco2_mira_c2479___AWLHHSCNPRIIHRNVSSNCILLDENDEAKITDFGLARLMNPVDTHLSTFINGDFGDLGYVAPEYMSTLVATLKGDVYSFGVVLLELVTRQKPIEVTNVQEAxxGNLVEWISHLSKNGLVQEAIDKSLIGRGQDDELLQVLKVACACVLSPHKER
B8LM41_________________AWLHHSCNPRVIHRNISSNSILLDDEYEPRITDFGLARLMNPVDTHLSTFINGDFGDLGYVAPEYMRTLVATLKGDVYSFGVVLLELVTGQKPINVENGEDGxxGNLVDWITKLSNDGRISEAIDKSLIGRGQEDELLQFMRVACACVLSGAKER

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain