SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7943

Length: 499 nt

UniGene Fasta

>biog2_v2.0_unigene7943
CAGCCAGCAATGGAGGAGGGTAGTGGAGCAGGGGATCAAGTAATAAGAGAAGTGGTTTCAATCCCACAGACCCCAAAGGGCAGTGCCACTCCCAATGGCACACGTTCCCCTCACCATAGCAATCATGTGTCCACGGCACAGTCCTACGCAATAACACCTGCCGGAACTCGGCCTGCTTCAGCATTGGCATCTCCTTCTATGTCAAGGTCTCCTCTACTCAAAACACCGAAGACCCCCAGGACTCCTAGAACTCCTAGGACTCCATGGACCCCCTCACTCAGTCCAATTGGGACTCCGATGAGGAGGGTGCTGACAAATATGAAGGCTTATCTGGAAGATATGGGTCATATCACAAAGTTAAATCCTCAGGATGCTTGGTTACCCATCACAGAATCTAGAAATGGAAATGCTTACTATTCGGCTTTCCATAATCTCAATGCTGGCATTGGGTTCCAGGCCTTGGTTCTGCCCGTGTCTTTCACATTTTTGGGATGGACAT

Ace file of the UniGene biog2_v2.0_unigene7943

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene200	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Lysine histidine transporter-like 8 n=5 Tax=rosids RepID=LHTL8_ARATH	-	-	66%
FL-Next	sp=Lysine histidine transporter-like 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	53%
Blast2go	lysine histidine transporter-like 8	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transport	GO:0006865	Biological Process	78%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9SX98

Fln msg: Distance to subject end: 392 aas, your sequence is shorter than subject: 163 - 519

Fln protein: MEEGSGAGDQVIREVVSIPQTPKGSATPNGTRSPHHSNHVSTAQSYAITPAGTRPASALASPSMSRSPLLKTPKTPRTPRTPRTPWTPSLSPIGTPMRRVLTNMKAYLEDMGHITKLNPQDAWLPITESRNGNAYYSAFHNLNAGIGFQALVLPVSFTFLGWT

Protein Length: 164

Fln nts: CAGCCAGCA_-_ATGGAGGAGGGTAGTGGAGCAGGGGATCAAGTAATAAGAGAAGTGGTTTCAATCCCACAGACCCCAAAGGGCAGTGCCACTCCCAATGGCACACGTTCCCCTCACCATAGCAATCATGTGTCCACGGCACAGTCCTACGCAATAACACCTGCCGGAACTCGGCCTGCTTCAGCATTGGCATCTCCTTCTATGTCAAGGTCTCCTCTACTCAAAACACCGAAGACCCCCAGGACTCCTAGAACTCCTAGGACTCCATGGACCCCCTCACTCAGTCCAATTGGGACTCCGATGAGGAGGGTGCTGACAAATATGAAGGCTTATCTGGAAGATATGGGTCATATCACAAAGTTAAATCCTCAGGATGCTTGGTTACCCATCACAGAATCTAGAAATGGAAATGCTTACTATTCGGCTTTCCATAATCTCAATGCTGGCATTGGGTTCCAGGCCTTGGTTCTGCCCGTGTCTTTCACATTTTTGGGATGGACAT

Fln Alignment:

biogeco2_mira_c2470___EVVSIPQTPKGSA----TPNGTRSPHHSNHVSTAQSYAITPAGTRPASALASPSMSRXXXXXXXXXXXXXXXXXXXXXXXXXXIGTPMRRVLTNMKAYLEDMGHITKLNPQDAWLPITESRNGNAYYSAFHNLNAGIGFQALVLPVSFTFLGWT
Q9SX98_________________ELISIPATPRVSTPEILTPSGQRSPR--------------PA-TKPSSATWTPTS-------------------FISPRFLSPIGTPMKRVLVNMKGYLEEVGHLTKLNPQDAWLPITESRNGNAHYAAFHNLNAGVGFQALVLPVAFAFLGWS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain