SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7864

Length: 3230 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene7864
TAATAAATACGTGTATGCTGCGGATTTGCAAAAGATTTCAAAGCAAAACCAGTGTTGATCTCGAAAAACTTCCGAGCAGTGTGTGTAAGCTGATATCGAAGTTCAAGACAGCTCGAAAAGAGCCCAAAGCAAAACCAGTGTTGAACTGGGAAAATTTCCACAGCAATCAGTGAAAGCCAATATCGAAATTCAGAACAACTGGAGGAAAGACTACAAGAAGTTGATGATGTTGTCATATCTCGAATCATTTGGTGTAGAAAATCACATCCTTCAGAGGATGGATATGTTGAATTGCACGAAGGTATACAGTAGATTCGATGGTCTGGTCGAGGGCCTTATTCCAAAAGTTCAGGAGCTCTTTTTGCTGGAACAACGAAAGCCCAGAAAACAGCAAAATCCCATCTATGAGCAGTTCCTGAACATCCTCAATAATGGCGTTGCATTGGTGAAAAAGTGTGAGAAAACCAGCCGTTTTAACGTTTTCCAGAAACTCAGATATGCTTCTCAAATCCACCAGCTGGAGAAGGAGATTCTTGACTTGGTTCAGTACCAGATGCCTGTCCAATTAAGTCTTGATGTTACGAATCTTGTAACAGAGATAAAGCGCATTCGCCAACTGAGCGAGCAGTCCATGGATGAGAGAATGGTAAATGAAGCAATCGTGGCCAAGCTCACCAATGATCCACTGAAGAATGCCATGATGCTACAACAAATGGGTTCAGATGACATGCTTGATGGAGATTTGGAAGAAGCTCCTGCATGTAGTTATAATGGCTCGGTGAAGTCTGATTTTATCGTAGGGCTTGAGGAAAATATTTGGAATTTGAAGAGAATTCTGCTCCGGAGAGATGTGTCCGTGGTTGGGGTGCAAGGTATGGGGGGCGTTGGCAAAACGACCATGGCGTTGGCCCTTTCCGATGACCAAGAAATCAAAGGTGCTTTCGGAAACAATATCATTTTCATCACAGTGTCACAGTCTCCAAACCTGAAGGTAATTTTAGAGACTATGTGGGAGAAGATTGTTCGCAGGAAGAAACCTGTTTTTCAGAGTGTGGAGGATGCACACAGACAGCTGCAGCAGCAGCTGCTGAGGCAAGCTAAGCCAACTCTGGTGGTGTTGGATGATGTCTGGTCTAGGGCAAATTTGGAAAACTTGATATTTGAAGGTGAAGGTTATAAAACCCTTGTAACAACCCGAATTCGTTCTATCATACCCACAGCCACCTCTACCCAGATTTATGAATTGCCGGTGCTGGATGATGCCAATGCTCAGTCCCTCTTTTGCTTCTGGGCGTTTGGACAGAAATCAATTCCAACAGATGCAGATGAACGTCTAGTCAAGCAGGTGCAAGCAGAATGCAAAGGCCTGCCACTCGCTCTGAAGGTGATCGGAAGCTCTTTGCGTGGTGAAAGTCGCCCAGTGTGGGAGAGTGCTAAGAACAAGCTCCTGAATGGGGAATCAATATCAGATTATCATAAAGAAGGACTTCTTAGATGCTTGGAGAGCAGTATTGATGTCCTGGATGAGGAAGTACGGGAATGCTTCTTAGACCTGGGGTCCTTTCCAGAGGATAGGAAAATATCTGTGGATGCATTATTGGACATCTGGGTTTATGTGCGAAAGATGGAGTGGCACGATGCTTTTGTTATCTTATTGGAACTCGCTAGTAGGAATCTGTTAAACCTAACAAGCAATCTCAGGAGTTGTGCCATCAATTATGGAAGTACCTCGGAGCTCTACTTTTCTCAACATGATGTAATGCGAGACTTGGCCCTATATTTGGCATCCCGAGACTGGATTGTGAACAGGAAGAGGTTGTTTATGCCTAAAAAGGAGGATGGATTGCCAGGGAAATGGGAGTTACTCAAAGACCAAGCTTTTAATGCCCAAGTTGTTTCAATTCACACAGGTGCAATGGAAGAGGATCAGTGGTGCGAGATGAATTTTCGACGAGCAGAAGCCTTGGTTTTAAATTTTTCTGCGGGCAGCTACTTTCTTCCTTCGTTTTTAAGTTCTATGACAAAGCTTAAAGTCCTCATAGTACTCAATTATGGATCAAAGAGAGCCACAGTAAACGGATTACCGTCGCCATCTTCTCTCCCGCAGCTTAAGACCATACGCTTGGAGAGGTTGAATGTGCCTTCACTTCAAGAGCAGAGCAAACTCTTTCAGAACTTAGAAAAACTCTCGTTGAGCTTATGTGAAGGACTTGGAAATATGTCCAGGTTTAACACCACCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGACGAGTTGCCCTCTGATATTTGCGACATGTCTTCAGTGGTAAACTGGTCTATCACCAACTGTCACCTTCTTCAAAAGTTACCTGATGACATGGAAAAGCTTAGCTCTTTAAGAATGTTAAGGCTATCTGCATGTCTAGGCTTGAAAGAGCTACCAGCATCCATTGGAAAACTTGGGAAGCTTGAATATCTGGACATTTCGCTGTGTGAGTGCTTAAAGGAAATTCCCGAGGAAATAGGACAACTAAAGAAACTCCAAGTACTTGACATGAGAGAGTGCTCTCGTTTGAGGAAGCTGCCTAAGTCAGTGGAAGGCATGAAATCTCTGAGGCATGTTATCTGCGATGAGAAGATTGGGCAGCAATGGTTGCGTGTCAAGAGCTCTGTTCTCAACGAGCTTAAAGTTGAAATTGTGGATGCACATTTCAGCTTGGATTGGCTCGATGGTTGATATCACCCAGACAGGATGCAGGTGCAACTAGACTGCAATTCACCTGCATTCATGACGAGGACATGGTGCGGTCAAGACCATTTACGCTACTTGCATTTGTTGAAGGTCCAACTTGGTGTTACCCGTGCGTGTAGCTATTCTGAATCTCTACTTGGGTGTTTTTATGGCTTTATGTCGTCTGTGTGAGTGTGCACGCTTTATTTTGAACAAGGACACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTGACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTACCAAGCTTATCAGAAGTCCTTGGTGCCCGTGAATGTAAATGGTGATTTCCTTTACAATAATGTCTTGGTTTATATGGTATGTAATGACAATATGTTATATGCAATGACACTAGTAGTTT

Ace file of the UniGene biog2_v2.0_unigene7864 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15954	17/101
SustainPine v2.0	sp_v2.0_unigene15969	34/101
SustainPine v2.0	sp_v2.0_unigene18401	2/101
SustainPine v2.0	sp_v2.0_unigene21606	3/101
SustainPine v2.0	sp_v2.0_unigene61253	43/101

Source	Descriptions	Term	Type	Identity
AutoFact	Disease resistance associated protein (Fragment) n=8 Tax=Pinaceae RepID=Q2VWL9_PICAB	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	leucine rich repeat-like protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg:

Fln protein: MMLSYLESFGVENHILQRMDMLNCTKVYSRFDGLVEGLIPKVQELFLLEQRKPRKQQNPIYEQFLNILNNGVALVKKCEKTSRFNVFQKLRYASQIHQLEKEILDLVQYQMPVQLSLDVTNLVTEIKRIRQLSEQSMDERMVNEAIVAKLTNDPLKNAMMLQQMGSDDMLDGDLEEAPACSYNGSVKSDFIVGLEENIWNLKRILLRRDVSVVGVQGMGGVGKTTMALALSDDQEIKGAFGNNIIFITVSQSPNLKVILETMWEKIVRRKKPVFQSVEDAHRQLQQQLLRQAKPTLVVLDDVWSRANLENLIFEGEGYKTLVTTRIRSIIPTATSTQIYELPVLDDANAQSLFCFWAFGQKSIPTDADERLVKQVQAECKGLPLALKVIGSSLRGESRPVWESAKNKLLNGESISDYHKEGLLRCLESSIDVLDEEVRECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVILLELASRNLLNLTSNLRSCAINYGSTSELYFSQHDVMRDLALYLASRDWIVNRKRLFMPKKEDGLPGKWELLKDQAFNAQVVSIHTGAMEEDQWCEMNFRRAEALVLNFSAGSYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFQNLEKLSLSLCEGLGNMSRFNTTQSSLKLPIMLDFNLDHCCDLDELPSDICDMSSVVNWSITNCHLLQKLPDDMEKLSSLRMLRLSACLGLKELPASIGKLGKLEYLDISLCECLKEIPEEIGQLKKLQVLDMRECSRLRKLPKSVEGMKSLRHVICDEKIGQQWLRVKSSVLNELKVEIVDAHFSLDWLDG*

Protein Length: 843

Fln nts: TAATAAATACGTGTATGCTGCGGATTTGCAAAAGATTTCAAAGCAAAACCAGTGTTGATCTCGAAAAACTTCCGAGCAGTGTGTGTAAGCTGATATCGAAGTTCAAGACAGCTCGAAAAGAGCCCAAAGCAAAACCAGTGTTGAACTGGGAAAATTTCCACAGCAATCAGTGAAAGCCAATATCGAAATTCAGAACAACTGGAGGAAAGACTACAAGAAGTTG_-_ATGATGTTGTCATATCTCGAATCATTTGGTGTAGAAAATCACATCCTTCAGAGGATGGATATGTTGAATTGCACGAAGGTATACAGTAGATTCGATGGTCTGGTCGAGGGCCTTATTCCAAAAGTTCAGGAGCTCTTTTTGCTGGAACAACGAAAGCCCAGAAAACAGCAAAATCCCATCTATGAGCAGTTCCTGAACATCCTCAATAATGGCGTTGCATTGGTGAAAAAGTGTGAGAAAACCAGCCGTTTTAACGTTTTCCAGAAACTCAGATATGCTTCTCAAATCCACCAGCTGGAGAAGGAGATTCTTGACTTGGTTCAGTACCAGATGCCTGTCCAATTAAGTCTTGATGTTACGAATCTTGTAACAGAGATAAAGCGCATTCGCCAACTGAGCGAGCAGTCCATGGATGAGAGAATGGTAAATGAAGCAATCGTGGCCAAGCTCACCAATGATCCACTGAAGAATGCCATGATGCTACAACAAATGGGTTCAGATGACATGCTTGATGGAGATTTGGAAGAAGCTCCTGCATGTAGTTATAATGGCTCGGTGAAGTCTGATTTTATCGTAGGGCTTGAGGAAAATATTTGGAATTTGAAGAGAATTCTGCTCCGGAGAGATGTGTCCGTGGTTGGGGTGCAAGGTATGGGGGGCGTTGGCAAAACGACCATGGCGTTGGCCCTTTCCGATGACCAAGAAATCAAAGGTGCTTTCGGAAACAATATCATTTTCATCACAGTGTCACAGTCTCCAAACCTGAAGGTAATTTTAGAGACTATGTGGGAGAAGATTGTTCGCAGGAAGAAACCTGTTTTTCAGAGTGTGGAGGATGCACACAGACAGCTGCAGCAGCAGCTGCTGAGGCAAGCTAAGCCAACTCTGGTGGTGTTGGATGATGTCTGGTCTAGGGCAAATTTGGAAAACTTGATATTTGAAGGTGAAGGTTATAAAACCCTTGTAACAACCCGAATTCGTTCTATCATACCCACAGCCACCTCTACCCAGATTTATGAATTGCCGGTGCTGGATGATGCCAATGCTCAGTCCCTCTTTTGCTTCTGGGCGTTTGGACAGAAATCAATTCCAACAGATGCAGATGAACGTCTAGTCAAGCAGGTGCAAGCAGAATGCAAAGGCCTGCCACTCGCTCTGAAGGTGATCGGAAGCTCTTTGCGTGGTGAAAGTCGCCCAGTGTGGGAGAGTGCTAAGAACAAGCTCCTGAATGGGGAATCAATATCAGATTATCATAAAGAAGGACTTCTTAGATGCTTGGAGAGCAGTATTGATGTCCTGGATGAGGAAGTACGGGAATGCTTCTTAGACCTGGGGTCCTTTCCAGAGGATAGGAAAATATCTGTGGATGCATTATTGGACATCTGGGTTTATGTGCGAAAGATGGAGTGGCACGATGCTTTTGTTATCTTATTGGAACTCGCTAGTAGGAATCTGTTAAACCTAACAAGCAATCTCAGGAGTTGTGCCATCAATTATGGAAGTACCTCGGAGCTCTACTTTTCTCAACATGATGTAATGCGAGACTTGGCCCTATATTTGGCATCCCGAGACTGGATTGTGAACAGGAAGAGGTTGTTTATGCCTAAAAAGGAGGATGGATTGCCAGGGAAATGGGAGTTACTCAAAGACCAAGCTTTTAATGCCCAAGTTGTTTCAATTCACACAGGTGCAATGGAAGAGGATCAGTGGTGCGAGATGAATTTTCGACGAGCAGAAGCCTTGGTTTTAAATTTTTCTGCGGGCAGCTACTTTCTTCCTTCGTTTTTAAGTTCTATGACAAAGCTTAAAGTCCTCATAGTACTCAATTATGGATCAAAGAGAGCCACAGTAAACGGATTACCGTCGCCATCTTCTCTCCCGCAGCTTAAGACCATACGCTTGGAGAGGTTGAATGTGCCTTCACTTCAAGAGCAGAGCAAACTCTTTCAGAACTTAGAAAAACTCTCGTTGAGCTTATGTGAAGGACTTGGAAATATGTCCAGGTTTAACACCACCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGACGAGTTGCCCTCTGATATTTGCGACATGTCTTCAGTGGTAAACTGGTCTATCACCAACTGTCACCTTCTTCAAAAGTTACCTGATGACATGGAAAAGCTTAGCTCTTTAAGAATGTTAAGGCTATCTGCATGTCTAGGCTTGAAAGAGCTACCAGCATCCATTGGAAAACTTGGGAAGCTTGAATATCTGGACATTTCGCTGTGTGAGTGCTTAAAGGAAATTCCCGAGGAAATAGGACAACTAAAGAAACTCCAAGTACTTGACATGAGAGAGTGCTCTCGTTTGAGGAAGCTGCCTAAGTCAGTGGAAGGCATGAAATCTCTGAGGCATGTTATCTGCGATGAGAAGATTGGGCAGCAATGGTTGCGTGTCAAGAGCTCTGTTCTCAACGAGCTTAAAGTTGAAATTGTGGATGCACATTTCAGCTTGGATTGGCTCGATGGTTGA___TATCACCCAGACAGGATGCAGGTGCAACTAGACTGCAATTCACCTGCATTCATGACGAGGACATGGTGCGGTCAAGACCATTTACGCTACTTGCATTTGTTGAAGGTCCAACTTGGTGTTACCCGTGCGTGTAGCTATTCTGAATCTCTACTTGGGTGTTTTTATGGCTTTATGTCGTCTGTGTGAGTGTGCACGCTTTATTTTGAACAAGGACACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTGACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTACCAAGCTTATCAGAAGTCCTTGGTGCCCGTGAATGTAAATGGTGATTTCCTTTACAATAATGTCTTGGTTTATATGGTATGTAATGACAATATGTTATATGCAATGACACTAGTAGTTT

Fln Alignment:

biogeco2_mira_c2330___NHILQRMDMLNCTKVYSRFDGLVEGLIPKVQELFLLEQRKPRKQQNPIYEQFLNILNNGVALVKKCEKTSRFNVFQKLRYASQIHQLEKEILDLVQYQMPVQLSLDVTNLVTEIKRIRQLSEQ-SMDERMVNEAIVAKLTNDPLKNAMMLQQMGSDDMLDGDLEEAPACSYNGSVKSDFIVGLEENIWNLKRILLRRDXXXXXXXXXXXXGKTTMALALSDDQEIKGAFGNNIIFITVSQSPNLKVILETMWEKIVRRKKPVFQSVEDAHXXXXXXXXXQAKPTLVVLDDVWSRANLENLIFEGEGYKTLVTTRIRSIIPTATSTQIYELPVLDDANAQSLFCFWAFGQKSIPTDADERLVKQVQAECKGLPLALKVIGSSLRGESRPVWESAKNKLLNGESISDYHKEGLLRCLESSIDVLDEEVRECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVIXXXXXXXXXXXXXXXXXSCAINYGSTSELYFSQHDVMRDLALYLASRDWIVNRKRLFMPKKEDGLPGKWELLKDQAFNAQVVSIHTGAMEEDQWCEMNFRRAEALVLNFSAGSYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFQNLEKLSLSLCEGLGNMSRFNTTQSSLKLPIMLDFNLDHCCDLDELPSDICDMSSVVNWSITNCHLLQKLPDDMEKLSSLRMLRLSACLGLKELPASIGKLGKLEYLDISLCECLKEIPEEIGQLKKLQVLDMRECSRLRKLPKSVEGMKSLRHVICDEKIGQQWLRVKSSVLNELKVEIVDAHFSLDWLDG
B8LKC3_________________DHILYGIDILNCKKSYSRFDGLVEGLLPKVQELYLSEQRKPKKEKNPIYEQFLNILNDGVALVKKCKNTSRYNVFQNLRYASQIHQLEKEITDFVRYQMPVNLSLDVKNFIEELKNLRQLCEKGSVDERKVNEAIVPKLTNDPQKNAVMLQQIGSDDMFDGVLDEAPP-----SPKSDFVVGLEKNISNVKRILLDRDVSVVGVDGMGGVGKTTMAMALSDDQEIKGVFRNNIVFITVSQSPNLKVILETMWEKIVRRKKPEFQSVEDAHRQLQQQLLRQAKPTLVVLDDVWSRANLENLLFEGEGYKTLVTTRDRSTIPTTTSIRIYELPVLDDADAMPLFCFWAFGQKSIPSSADEHLVKQVQAECKGLPLALKVIGSSLHGEPRPVWESAKNKLRNGESISDYHKEGLLRRLESSIDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVILLELARRNLLNLTSNLRSRAINYGSASELYFSQHDVMRDLALHLASRDRIVQRKRLFMPKKEESLPGKWEVLKDQAFDAQVVSIHTGAMEEDQWCEMNFRQAEALVLNFSASNYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPAPSSLTQLRTIRLERLNVPSLQEHSRAFQSLEKLSLSLCEGLGNMSRFNSTQSSLKLPIMLDFNLDHCCDLEELPPGICDMSSVENWSITNCHLLQKLPDDMGKLCSLRMLRLSACLGLKELPDSIGKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGLKSLKHVICDEKIGQQWLRVKSSVLKELRVEIVDAHFSLDWLDG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
2923			66	33	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain