SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7695

Length: 360 nt

UniGene Fasta

>biog2_v2.0_unigene7695
CTTATTCTCAGATGTCATGACCATCCATTCTTTTTTCTTGTACGCAACACTGGCAGTTGGATGGAAATAGGTAACACCATCAGCCATTTTGGTATTATGAGTGCTCAAGTTGTCTTCGTTCTTCTTCTCTTTGCTATCACAAATATTTATACAAGAGATATCACAATAGGACCGAGTCAATGGTCATCTCATAAAGCACGTTAGCCTTGCGTTGATAGCTGGCAGATGTATTAGAAGAGTTCACCATTGCCCTTGTTTCATATATATTCCTCAAAATTTATCTGCTACAAATCATCAACAGGCATTCCTTTCCGGAATTGGCATTCGTGTGATTTTGACAAATCTTATGAAGGGTGCTTT

Ace file of the UniGene biog2_v2.0_unigene7695

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7119	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative phosphatidylinositolglycan class N short form [Arabidopsis thaliana]	-	-	7.0e-35	71%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	80%
Blast2go	gpi ethanolamine phosphate transferase 1-like	-	-	4.91012e-39	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Sulfuric ester hydrolases.	EC:3.1.6.-	-	4.91012e-39	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	GPI anchor biosynthetic process	GO:0006506	Biological Process	4.91012e-39	89%
Blast2go	sulfuric ester hydrolase activity	GO:0008484	Molecular Function	4.91012e-39	89%
Blast2go	transferase activity	GO:0016740	Molecular Function	4.91012e-39	89%
Blast2go	endoplasmic reticulum membrane	GO:0005789	Cellular Component	4.91012e-39	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	4.91012e-39	89%

Source	InterPros	Term	Type	Identity
Sma3	GPI ethanolamine phosphate transferase 1	IPR007070	-	-
Sma3	Alkaline phosphatase-like, alpha/beta/alpha	IPR017849	-	-
Sma3	GPI ethanolamine phosphate transferase 1, C-terminal	IPR017852	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9GHP3

Fln msg: your sequence is shorter than subject: 68 - 880

Fln protein: LILRCHDHPFFFLVRNTGSWMEIGNTISHFGIMSAQVVFVLLLFAITNIYTRDITIGPSQWSSHKAR*

Protein Length: 69

Fln nts: CTTATTCTCAGATGTCATGACCATCCATTCTTTTTTCTTGTACGCAACACTGGCAGTTGGATGGAAATAGGTAACACCATCAGCCATTTTGGTATTATGAGTGCTCAAGTTGTCTTCGTTCTTCTTCTCTTTGCTATCACAAATATTTATACAAGAGATATCACAATAGGACCGAGTCAATGGTCATCTCATAAAGCACGTTAG___CCTTGCGTTGATAGCTGGCAGATGTATTAGAAGAGTTCACCATTGCCCTTGTTTCATATATATTCCTCAAAATTTATCTGCTACAAATCATCAACAGGCATTCCTTTCCGGAATTGGCATTCGTGTGATTTTGACAAATCTTATGAAGGGTGCTTT

Fln Alignment:

biogeco2_mira_c1973___FFFLVRNTGSWMEIGNTISHFGIMSAQVVFVLLLFAITNIYTRDITIGPSQWSSHKA
B9GHP3_________________FFFLVRNTGSWMEIGNSISHFGIVSAQVVFVLLLFALTNTYTKDIQIGSAGSSSQKA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
179	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain