SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7670

Length: 348 nt

UniGene Fasta

>biog2_v2.0_unigene7670
GTGAAGTTGAAGAAGGCCTAGGTTCTGGAGCTATCATCTTCCATGAATTTGTTAAAAAACACCTGAAGAGGTCAAAATGTTAAGAGAAAACATAGAACAGAGAGAGGCATTACGTAAACAGAGGAGAGCTGAGCAGGAAGCAAATGTTCATCGGAAGGAACTTGCCAAGCAAGCATTAAAGCGAAAGCCAAATTTGATGAATCCACCCACTGAAGTTGAGGGCATGGAACAAAATGATAATGATGATATAGATGATGCAGACTGGTATCGACAGGAAGTGGGTGAAGAACCTGATTCAGAATTTATGGCTGGTGTTTATAGAAGCAAAGATAGAAATTCTATGGGTTT

Ace file of the UniGene biog2_v2.0_unigene7670

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10902	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Peter Pan-like protein [Arabidopsis thaliana] ref\|NP_974976.1\| Peter Pan-like protein [Arabidopsis thaliana] dbj\|BAB10077.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED97515.1\| Peter Pan-like protein [Arabidopsis thaliana] gb\|AED97516.1\| Peter P	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	peter pan-like protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	78%
Blast2go	aminoacyl-tRNA ligase activity	GO:0004812	Molecular Function	78%
Blast2go	ATP binding	GO:0005524	Molecular Function	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Brix domain	IPR007109	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMU0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 99 aas, your sequence is shorter than subject: 115 - 491

Fln protein: *S*RRPRFWSYHLP*IC*KTPEEVKMLRENIEQREALRKQRRAEQEANVHRKELAKQALKRKPNLMNPPTEVEGMEQNDNDDIDDADWYRQEVGEEPDSEFMAGVYRSKDRNSMG

Protein Length: 116

Fln nts: GTGAAGTTGAAGAAGGCCTAGGTTCTGGAGCTATCATCTTCCATGAATTTGTTAAAAAACACCTGAAGAGGTCAAAATGTTAAGAGAAAACATAGAACAGAGAGAGGCATTACGTAAACAGAGGAGAGCTGAGCAGGAAGCAAATGTTCATCGGAAGGAACTTGCCAAGCAAGCATTAAAGCGAAAGCCAAATTTGATGAATCCACCCACTGAAGTTGAGGGCATGGAACAAAATGATAATGATGATATAGATGATGCAGACTGGTATCGACAGGAAGTGGGTGAAGAACCTGATTCAGAATTTATGGCTGGTGTTTATAGAAGCAAAGATAGAAATTCTATGGGTTT

Fln Alignment:

biogeco2_mira_c1930___KTPEEVKMLRENIEQREALRKQRRAEQEANVHRKELAKQALKRKPNLMNPPTEVEGMEQXXXXXXXXXXWYRQEVGEEPDSEFMAGVYRSKDRNSMG
B8LMU0_________________KTPEEVKMLRENIEQREALRKQRKAEQEANVHRKELAKQALKRKPNLMNPPTEVEGVEQ---NEIDDADWYRQEVGEEPDSEFMAGVSRSKDRNSMG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain