SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7630

Length: 426 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene7630
ATGGACCCATCTTGTGAAAAACATCACAGGCTTAAGCGCTGGTGCCTTGATTTACTCTGCAGAAATCGAGAGAGAAATTTTCCAGAGTTTGCCAAGGTGTTCGATGAGCTCAGCGTGGCCCTCGAGAATGAAATGGCGAGTAGTGGGAAGGCAAGTTTCAGTGATCAGATGGATCAATTGCTGTGTAATTTTCTTTTCCGGTCCATTGCCGGCGCTGACCCGTTGGCTCCCGGGCCAGCCAGCCTCGGAACCGATGGTCCTTCCTGTATCATAAAGTGGGTCGCTTCTGTGGTCGGTCCTACCATAAGCACAGGCGTCCTTCCGAAATTGTTGGACGAGTTCACCATCCATTTATTTCCTCTGCCATTCTTCCTCGTCTCCAAATATTACCACAAACTCTATAATTTCCTGTGGATGAATGCGACT

Ace file of the UniGene biog2_v2.0_unigene7630 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene631	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Allene oxide synthase n=1 Tax=Camellia sinensis RepID=C7BBB6_CAMSI	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	allene oxide synthase	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	heme binding	GO:0020037	Molecular Function	67%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	67%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	67%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKD1

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 142 - 475

Fln protein: MDPSCEKHHRLKRWCLDLLCRNRERNFPEFAKVFDELSVALENEMASSGKASFSDQMDQLLCNFLFRSIAGADPLAPGPASLGTDGPSCIIKWVASVVGPTISTGVLPKLLDEFTIHLFPLPFFLVSKYYHKLYNFLWMNAT

Protein Length: 143

Fln nts: ATGGACCCATCTTGTGAAAAACATCACAGGCTTAAGCGCTGGTGCCTTGATTTACTCTGCAGAAATCGAGAGAGAAATTTTCCAGAGTTTGCCAAGGTGTTCGATGAGCTCAGCGTGGCCCTCGAGAATGAAATGGCGAGTAGTGGGAAGGCAAGTTTCAGTGATCAGATGGATCAATTGCTGTGTAATTTTCTTTTCCGGTCCATTGCCGGCGCTGACCCGTTGGCTCCCGGGCCAGCCAGCCTCGGAACCGATGGTCCTTCCTGTATCATAAAGTGGGTCGCTTCTGTGGTCGGTCCTACCATAAGCACAGGCGTCCTTCCGAAATTGTTGGACGAGTTCACCATCCATTTATTTCCTCTGCCATTCTTCCTCGTCTCCAAATATTACCACAAACTCTATAATTTCCTGTGGATGAATGCGACT

Fln Alignment:

biogeco2_mira_c1833___MDPSCEKHHRLKRWCLDLLCRNRERNFPEFAKVFDELSVALENEMASSGKASFSDQMDQLLCNFLFRSIAGADPLAPGPASLGTDGPSCIIKWVASVVGPTISTGVLPKLLDEFTIHLFPLPFFLVSKYYHKLYNFLWMNA
B8LKD1_________________LDPSEENHSKLKRFCFEVLGSSRDRYFPEFARAFDELSAAVDKEMASRGKASFGEQIEQLIFNFLCRSLTGADPVTQG---LGTDGPSYVIKWLAPQLAPTLSSGFLPKIVDELTIHSIRLPFWPVSGYYDKLFNFLWTHA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain