SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7591

Length: 495 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene7591
CGAATTACGATGACATGAATATGCTATCAGAAAGCTTGATGATTCTGAATTCAGGAATGCATTTTCCCGGGGTTATATCCGGGTCAAGGAGTTATGTATCCAAGAGAAGCATTTCAAGGAGCCCCAGCCGCAGTTACAGCCATAGTCGTAGTCGTTCTGTGTCGCGGAGTCGCAGTCGGAGCCGAAACAGAAGCAGAAGCAGGACCCCTATTGGCAGCAGGAGCCGTAGTAGGAGCCGCAGCATCAGCCACAGCAAGTCTCCGAAGCACAAAGCACCGGCTCGTTCAATTTCAAAGTCACGATCTCGTTCTCCATCCCAGCCTCGCCCTCGTCCCAGGCGCCATTCTCTGTCTAGATCACTATCAAGGTCCAGGTCAAGGTCCAGAACCCCTCAGCGTTTGCCAACCTCATATAAACCTCGAACTCAAAGTCCTAGAAGCCGCAGCCTCAGTCGGAGCCCCAGCCCTAGCAGGAGCCGCAGCCGATCTTATTCTC

Ace file of the UniGene biog2_v2.0_unigene7591 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22397	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	arginine serine-rich splicing	-	-	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQY2

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 127 aas, putative chimeric sequence, your sequence is shorter than subject: 48 - 331

Fln protein: ELR*HEYAIRKLDDSEFRNAFSRGYIRVKELCIQEKHFKEPQPQLQP*

Protein Length: 49

Fln nts: CGAATTACGATGACATGAATATGCTATCAGAAAGCTTGATGATTCTGAATTCAGGAATGCATTTTCCCGGGGTTATATCCGGGTCAAGGAGTTATGTATCCAAGAGAAGCATTTCAAGGAGCCCCAGCCGCAGTTACAGCCATAG___TCGTAGTCGTTCTGTGTCGCGGAGTCGCAGTCGGAGCCGAAACAGAAGCAGAAGCAGGACCCCTATTGGCAGCAGGAGCCGTAGTAGGAGCCGCAGCATCAGCCACAGCAAGTCTCCGAAGCACAAAGCACCGGCTCGTTCAATTTCAAAGTCACGATCTCGTTCTCCATCCCAGCCTCGCCCTCGTCCCAGGCGCCATTCTCTGTCTAGATCACTATCAAGGTCCAGGTCAAGGTCCAGAACCCCTCAGCGTTTGCCAACCTCATATAAACCTCGAACTCAAAGTCCTAGAAGCCGCAGCCTCAGTCGGAGCCCCAGCCCTAGCAGGAGCCGCAGCCGATCTTATTCTC

Fln Alignment:

biogeco2_mira_c1757___EYAIRKLDDSEFRNAFSRGYIRVKE
B8LQY2_________________KYAIRKLDDSEFRNAFSRGYIRVKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain