SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7585

Length: 407 nt

UniGene Fasta

>biog2_v2.0_unigene7585
ATGGGCATGACCACGATCATCATGAGCATGGGCATGACAGTAACGGGCATAGCCATGAGCATGATCATGTACATGACCCTGGTGTTTCTTCTGTTAGCATTGTTTGTGATGGAACATTAGATCTTACCAAGATAAATATCTGGTTGGGCAGACTGTTGCTGGAACGGAGTGACGATATTTACAGAATGAAGGGCCTGCTTTCTGTTGCTGGATTTAATGAACGATATGTTTTTCAGGGTGTGCATGATCTTTTCCATGGCTCCCCTGACAGAGCATGGGGTTCTGATGAGAAAAGAACAAATAAGATCATATTTATTGGGAGAAACCTAGATGAAGAAGCGTTACAGAAGGGTTTCAGGGAGTGCTTGCATTGATCTTATATTTTGTAAATTTGGACTGTAGCCTAA

Ace file of the UniGene biog2_v2.0_unigene7585

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8731	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	plastid transcriptionally active 17 protein [Arabidopsis thaliana] gb\|AAF27129.1\|AC018849_17 hypothetical protein; 58060-60358 [Arabidopsis thaliana] gb\|AAT47799.1\| At1g80480 [Arabidopsis thaliana] gb\|AAU05519.1\| At1g80480 [Arabidopsis thaliana] gb\|AEE364	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	cobw domain-containing protein 2-like isoform 2	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid chromosome	GO:0009508	Cellular Component	0.0	77%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cobalamin (vitamin B12) biosynthesis CobW-like	IPR003495	-	0.0	-
Sma3	Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal	IPR011629	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLY3

Fln msg: your sequence is shorter than subject: 124 - 450

Fln protein: GHDHDHHEHGHDSNGHSHEHDHVHDPGVSSVSIVCDGTLDLTKINIWLGRLLLERSDDIYRMKGLLSVAGFNERYVFQGVHDLFHGSPDRAWGSDEKRTNKIIFIGRNLDEEALQKGFRECLH*

Protein Length: 125

Fln nts: ATGGGCATGACCACGATCATCATGAGCATGGGCATGACAGTAACGGGCATAGCCATGAGCATGATCATGTACATGACCCTGGTGTTTCTTCTGTTAGCATTGTTTGTGATGGAACATTAGATCTTACCAAGATAAATATCTGGTTGGGCAGACTGTTGCTGGAACGGAGTGACGATATTTACAGAATGAAGGGCCTGCTTTCTGTTGCTGGATTTAATGAACGATATGTTTTTCAGGGTGTGCATGATCTTTTCCATGGCTCCCCTGACAGAGCATGGGGTTCTGATGAGAAAAGAACAAATAAGATCATATTTATTGGGAGAAACCTAGATGAAGAAGCGTTACAGAAGGGTTTCAGGGAGTGCTTGCATTGA___TCTTATATTTTGTAAATTTGGACTGTAGCCTAA

Fln Alignment:

biogeco2_mira_c1747___VHDPGVSSVSIVCDGTLDLTKINIWLGRLLLERSDDIYRMKGLLSVAGFNERYVFQGVHDLFHGSPDRAWGSDEKRTNKIIFIGRNLDEEALQKGFRECL
B8LLY3_________________VHDPGVSSVSIVCDGTLNLTKINTWLGELLLERSDDIYRMKGLLSVDGFNERYVFQGVHDLFHGSPDRVWGPDEKRTNKIIFIGKNLDEEALQKGFRECL

SNPs (tot: 3)

Position	A %	C %	G %	Probability
128		66	33	0.997461
129		66	33	0.997461
130	33		33	0.997689

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain