SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7574

Length: 455 nt

UniGene Fasta

>biog2_v2.0_unigene7574
ATGGGGACTATCGACAAGAGTAAATTGTGGCCAACGGAAAATGGGGAGAGGAAGACGGAAGAGATTCTAGTATCAGCAACAGTGGATTGTGGCCAACAGAAAGCGAATCAAAGGAAAAAGGGAGATTCGCCATAGGCAGATTTGTGCTCTGGTTGTTAATGCAGAAGAGAGAAATTATCTAATCTGGCGCAGAGAATAGGTAAAGCGATCAGGAGGCCTGGTGTCATGTCCAAGGCCCGCGTATATGCCGATATCAACGTTCTTCGCCCCAAAGAATATTGGGATTACGAATCGCTCGCAGTGCAATGGGGTGGTCAGGATGATTATGAAGTGGTCGTAAGGTTGGCAGAGGGAAATACAGCGAGGTATTTGAAGGGATCAATACCACAAGCAACGAGCGGTGTATTATCAAGATCTTGAAACCTGTTAAAGAAAAAGAAGATCAAGAGAGAGAT

Ace file of the UniGene biog2_v2.0_unigene7574

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13588	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	casein kinase II alpha [Triticum aestivum]	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	casein kinase ii subunit alpha-2-like	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	photoperiodism	GO:0009648	Biological Process	96%
Blast2go	inflorescence development	GO:0010229	Biological Process	96%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	96%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	96%
Blast2go	ATP binding	GO:0005524	Molecular Function	96%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	96%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVF1

Fln msg: Overlapping hits, possible frame ERROR between 378 and 336, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 256 aas, your sequence is shorter than subject: 152 - 435

Fln protein: MGTIDKSKLWPTENGERKTEEILVSATVDCGQQKANQRKKGDSP*ADLCSGC*CRREKLSNLAQRIGKAIRRPGVMSKARVYADINVLRPKEYWDYESLAVQWGGQDDYEVxxxxxxxxxxxxxxxxNTTSNERCIIKILKPVKEKEDQERD

Protein Length: 153

Fln nts: ATGGGGACTATCGACAAGAGTAAATTGTGGCCAACGGAAAATGGGGAGAGGAAGACGGAAGAGATTCTAGTATCAGCAACAGTGGATTGTGGCCAACAGAAAGCGAATCAAAGGAAAAAGGGAGATTCGCCATAGGCAGATTTGTGCTCTGGTTGTTAATGCAGAAGAGAGAAATTATCTAATCTGGCGCAGAGAATAGGTAAAGCGATCAGGAGGCCTGGTGTCATGTCCAAGGCCCGCGTATATGCCGATATCAACGTTCTTCGCCCCAAAGAATATTGGGATTACGAATCGCTCGCAGTGCAATGGGGTGGTCAGGATGATTATGAAGTGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAATACCACAAGCAACGAGCGGTGTATTATCAAGATCTTGAAACCTGTTAAAGAAAAAGAAGATCAAGAGAGAGAT

Fln Alignment:

biogeco2_mira_c1722___SNLAQRIGKAIRRPGVMSKARVYADINVLRPKEYWDYESLAVQWGGQDDYEVVxxxxxxxxxxxxxxINTTSNERCIIKILKPVKEKE
A9NVF1_________________AKLAQKIGKSIRRPGVTSKARVYADVNVVRPKEYWDYEALTVQWGDQEDYEVVxxxxxxxxxxxxxxVNSINNERCIIKILKPVKKKK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
129			25	75	0.996473
130		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain