SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7557

Length: 254 nt

UniGene Fasta

>biog2_v2.0_unigene7557
GTACGCTTATCTCTTATGAAGGCAGAGTTCAGCTTCTAGAGATTGCACAGGTTCCAGAGGAGCATGTTGGCGAGTTCAAGTCGATTGAAAAGTTCAAAATATTCAATACCAATAATTTATGGGTGAACTTGAAGGCGATTAAGAGGCTCGTGGAGGCTGATGCTCTTAAAATGGAGATAATTCCAAATCCAAAGGAAGTAGATGGGGTAAAGGTGCTTCAGCTTGAAACGGCTGCAGGTGCTGCTATAAGGTTT

Ace file of the UniGene biog2_v2.0_unigene7557

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23129	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose pyrophosphorylase n=3 Tax=Pinaceae RepID=A6N839_PINTA	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	udp-glucose pyrophosphorylase	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	90%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	90%
Blast2go	callose deposition in cell wall	GO:0052543	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	transferase activity	GO:0016740	Molecular Function	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	UTP--glucose-1-phosphate uridylyltransferase	IPR002618	-	0.0	-
Sma3	UTP--glucose-1-phosphate uridylyltransferase, subgroup	IPR016267	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRA3

Fln msg: Distance to subject end: 129 aas, your sequence is shorter than subject: 84 - 236

Fln protein: TLISYEGRVQLLEIAQVPEEHVGEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRF

Protein Length: 85

Fln nts: GTACGCTTATCTCTTATGAAGGCAGAGTTCAGCTTCTAGAGATTGCACAGGTTCCAGAGGAGCATGTTGGCGAGTTCAAGTCGATTGAAAAGTTCAAAATATTCAATACCAATAATTTATGGGTGAACTTGAAGGCGATTAAGAGGCTCGTGGAGGCTGATGCTCTTAAAATGGAGATAATTCCAAATCCAAAGGAAGTAGATGGGGTAAAGGTGCTTCAGCTTGAAACGGCTGCAGGTGCTGCTATAAGGTTT

Fln Alignment:

biogeco2_mira_c1693___TLISYEGRVQLLEIAQVPEEHVGEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRF
B8LRA3_________________TLISYEGRVQLLEIAQVPKEHVGEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
126		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain