SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7548

Length: 613 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene7548 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1914	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein n=2 Tax=Populus trichocarpa RepID=B9IPW7_POPTR	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	f-box family protein	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	6-phosphogluconate-binding site	IPR006184	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	RINT-1/TIP-1	IPR007528	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
311	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain