SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7530

Length: 570 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene7530
CCTCATTTCAGCAGGCAGGAGGGCTCAGGGTCATCCAAACATCATAAGGGCAAGACGACAGATTGCTTTTCTCCAGATCATCCATTTCATGTAGAACTTTATAATTATATTAAACAGCAAGCAGCGATTGTAAAGCCTGTTGCCCCGGAAAAAATGCGATCTTTTCATGTGGATGTTCCAGAGCAGGATGATGAAGGAACCATTATTGTACAAACTCTAGAATCTGCATTACATAATTTAGGTGATGAAGAGGCAGTTGAGAATGGTGTTGCTAATTTGAATGTCAATGGGGATCAATCTCTGAGACACTGAAAAGCAGCTAGAAATGAGGTTCAAGGTTGAGCATGCTGAAAGTCGATTGGATATTTAAATAACTGGCCCACATATCTGGAAATCTGAGTTGACAATGTATGACATTGTGTTGTTATCCTTCAGTATCAGGGTTAATATTGTATACAATTCTCCAGTTTGACAATCTGATCTCAAACTGGTGTTTTGCCTCATTAATGTAATTGCATTAGATTATCTTATTTTGTGGGAGCGGTTGCCACTCCCACATTCTGCAAAATG

Ace file of the UniGene biog2_v2.0_unigene7530 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6956	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CRAL_TRIO multi-domain protein	-	-	3.0e-11	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	polyphosphoinositide binding protein ssh1p	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	79%
Blast2go	transporter activity	GO:0005215	Molecular Function	79%
Blast2go	intracellular	GO:0005622	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Cellular retinaldehyde binding/alpha-tocopherol transport	IPR001071	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3		IPR008273	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAD5

Fln msg: your sequence is shorter than subject: 104 - 342

Fln protein: PHFSRQEGSGSSKHHKGKTTDCFSPDHPFHVELYNYIKQQAAIVKPVAPEKMRSFHVDVPEQDDEGTIIVQTLESALHNLGDEEAVENGVANLNVNGDQSLRH*

Protein Length: 105

Fln nts: CCTCATTTCAGCAGGCAGGAGGGCTCAGGGTCATCCAAACATCATAAGGGCAAGACGACAGATTGCTTTTCTCCAGATCATCCATTTCATGTAGAACTTTATAATTATATTAAACAGCAAGCAGCGATTGTAAAGCCTGTTGCCCCGGAAAAAATGCGATCTTTTCATGTGGATGTTCCAGAGCAGGATGATGAAGGAACCATTATTGTACAAACTCTAGAATCTGCATTACATAATTTAGGTGATGAAGAGGCAGTTGAGAATGGTGTTGCTAATTTGAATGTCAATGGGGATCAATCTCTGAGACACTGA___AAAGCAGCTAGAAATGAGGTTCAAGGTTGAGCATGCTGAAAGTCGATTGGATATTTAAATAACTGGCCCACATATCTGGAAATCTGAGTTGACAATGTATGACATTGTGTTGTTATCCTTCAGTATCAGGGTTAATATTGTATACAATTCTCCAGTTTGACAATCTGATCTCAAACTGGTGTTTTGCCTCATTAATGTAATTGCATTAGATTATCTTATTTTGTGGGAGCGGTTGCCACTCCCACATTCTGCAAAATG

Fln Alignment:

biogeco2_mira_c1629___PHFSRQEGSGSSKHHKGKTTDCFSPDHPFHVELYNYIKQQAAIVKPVAPEKMRSFHVDVPEQDDEGTIIVQTLESALHNLGDEEAVENGVANLNVNGDQSLRH
D5AAD5_________________PHFSRHEGSGSSKHNNGKTIDCFSPDHPFHVDLYNYIKQQAVIVKPVAPTKMGSFHVDVPEQDDEGTIIVQTLESTLHNLGDEEAVENGVANLNVNGDQSLRH

SNPs (tot: 3)

Position	A %	C %	T %	Probability
247		20	60	0.99255
279		20	80	0.995493
366	80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain