SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7504

Length: 731 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene7504 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3667	1/7
SustainPine v2.0	sp_v2.0_unigene13398	6/7

Source	Descriptions	Term	Type	Identity
AutoFact	Origin recognition complex subunit, putative n=1 Tax=Ricinus communis RepID=B9S8V3_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	origin recognition complex subunit 6	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	75%
Blast2go	identical protein binding	GO:0042802	Molecular Function	75%
Blast2go	DNA binding	GO:0003677	Molecular Function	75%
Blast2go	nuclear origin of replication recognition complex	GO:0005664	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Origin recognition complex, subunit 6	IPR008721	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
554	20		80		0.995493
594		33		66	0.997452
605		66		33	0.997452
612	33		66		0.997452
657	33		66		0.997452
663	75			25	0.996477

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain