SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7485

Length: 377 nt

UniGene Fasta

>biog2_v2.0_unigene7485
GATGAGATTCTGGGGTTGACGAACTGCTGCCACATCTTTCACAAGAATTGCTTGGACAAATGGCTTGAACACGACCAGAAAACTTGCCCTCTGTGCAGATCTTGTTTAATGTCGGAGGTTGTTGAGGAGGAGGTAACAGAAGAGTCCTGGGCTGTGGAACGGTTGTTATACTTGTTTGGGGAGGACTTAGTGTTTCAATCATAGCATTCAGCCTTTAATAAACACACTCATTTGGTCATTTTACTGTAAAAGAGTTAAAAGCTAGTTATGGCATAGCTAGGTCGCAGAAAAATTTGACTAGTATGGCCATTTTAACTGTAAATACAGCATAGGCTCTGGTAGTTGTATATAGACAGACAGGTATATGTAGCATCCGG

Ace file of the UniGene biog2_v2.0_unigene7485

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20818	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RCF4_RICCO	-	-	9.0e-28	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	e3 ubiquitin-protein ligase rha1b-like	-	-	1.81863e-35	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to chitin	GO:0010200	Biological Process	1.81863e-35	62%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	1.81863e-35	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTT7

Fln msg: your sequence is shorter than subject: 68 - 189

Fln protein: DEILGLTNCCHIFHKNCLDKWLEHDQKTCPLCRSCLMSEVVEEEVTEESWAVERLLYLFGEDLVFQS*

Protein Length: 69

Fln nts: GATGAGATTCTGGGGTTGACGAACTGCTGCCACATCTTTCACAAGAATTGCTTGGACAAATGGCTTGAACACGACCAGAAAACTTGCCCTCTGTGCAGATCTTGTTTAATGTCGGAGGTTGTTGAGGAGGAGGTAACAGAAGAGTCCTGGGCTGTGGAACGGTTGTTATACTTGTTTGGGGAGGACTTAGTGTTTCAATCATAG___CATTCAGCCTTTAATAAACACACTCATTTGGTCATTTTACTGTAAAAGAGTTAAAAGCTAGTTATGGCATAGCTAGGTCGCAGAAAAATTTGACTAGTATGGCCATTTTAACTGTAAATACAGCATAGGCTCTGGTAGTTGTATATAGACAGACAGGTATATGTAGCATCCGG

Fln Alignment:

biogeco2_mira_c1531___EILGLTNCCHIFHKNCLDKWLEHDQKTCPLCRSCLMS
A9NTT7_________________EIRQLT-CCHLFHRPCLDKWLDHQQITCPLCRSCLIS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
192	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain