SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7479

Length: 425 nt

UniGene Fasta

>biog2_v2.0_unigene7479
ATGGGGATAGCTGGCTTGGTTTTATGTTTGAATGGGGGTTCATTTCCACCCGCTATGCTTGCGTTGCCACAAACCGATGTAATTTATTATTGTGCGCAGGGATTCCTTCTGCTCCTTATGATCCCCTAACCCCTAGATCGTAGCAGTGAAGCCATTAACGAATTTTGCGGGTTCAGAAAGATTCACTGAATCGCTTATTAAAACTCTGTTTCAGGAATGGCAACAGGAGGAGGAGCGTTGGATCTGGCCTCAGGAATGGGAGGCAACATTGAGAAAGAACAAATGCTGACCGCTGTTGAAGAGTACGAAAAATATCACATGTACTATGGTGGTGACGAAGGCTCGAGAAAATCTAACTATACAGACATGGTAAATAAATACTATGATCTGGCGACTAGTTTCTATGAGTATGGATGGGGGGAATC

Ace file of the UniGene biog2_v2.0_unigene7479

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25818	2/7
SustainPine v2.0	sp_v2.0_unigene60696	5/7

Source	Descriptions	Term	Type	Identity
AutoFact	24-sterol C-methyltransferase n=1 Tax=Gossypium hirsutum RepID=Q2QDF7_GOSHI	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	24-sterol c-methyltransferase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sterol 24-C-methyltransferase.	EC:2.1.1.41	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Steroid biosynthesis	00100	88%
Blast2go	Biosynthesis of terpenoids and steroids	01062	88%
Blast2go	Biosynthesis of plant hormones	01070	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	88%
Blast2go	sterol biosynthetic process	GO:0016126	Biological Process	88%
Blast2go	sterol 24-C-methyltransferase activity	GO:0003838	Molecular Function	88%
Blast2go	vacuole	GO:0005773	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRC7

Fln msg: Distance to subject end: 278 aas, your sequence is shorter than subject: 69 - 348

Fln protein: MATGGGALDLASGMGGNIEKEQMLTAVEEYEKYHMYYGGDEGSRKSNYTDMVNKYYDLATSFYEYGWGE

Protein Length: 70

Fln nts: ATGGGGATAGCTGGCTTGGTTTTATGTTTGAATGGGGGTTCATTTCCACCCGCTATGCTTGCGTTGCCACAAACCGATGTAATTTATTATTGTGCGCAGGGATTCCTTCTGCTCCTTATGATCCCCTAACCCCTAGATCGTAGCAGTGAAGCCATTAACGAATTTTGCGGGTTCAGAAAGATTCACTGAATCGCTTATTAAAACTCTGTTTCAGGA_-_ATGGCAACAGGAGGAGGAGCGTTGGATCTGGCCTCAGGAATGGGAGGCAACATTGAGAAAGAACAAATGCTGACCGCTGTTGAAGAGTACGAAAAATATCACATGTACTATGGTGGTGACGAAGGCTCGAGAAAATCTAACTATACAGACATGGTAAATAAATACTATGATCTGGCGACTAGTTTCTATGAGTATGGATGGGGGGAATC

Fln Alignment:

biogeco2_mira_c1520___MATGGGALDLASGMGGNIEKEQMLTAVEEYEKYHMYYGGDEGSRKSNYTDMVNKYYDLATSFYEYGWGE
C0PRC7_________________MATVGGAIDLASGVGGNIEKGQMLTAVEEYEKYHMYYGGDEDSRKSNYTDMVNKYYDLATSFYEYGWGE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
34		33	66		0.997453
35			66	33	0.997453
37		33	66		0.997453
52	33	66			0.999999
71	33	66			0.997452
137	33		66		0.999989
211	50			50	1.0
213		60	40		1.0
214	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain