SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7456

Length: 214 nt

UniGene Fasta

>biog2_v2.0_unigene7456
CGAAGAGGTAATTGATTTACCCAGATGGGTTCAGTCAGTGGTTCGAGAGGAGTGGACTGCCGAAGTATTTGATGTGGAATTGATGAGATATCAGAATATTGAAGAGGAGATGGTCCAGATGTTGCAGATTGCAATGGCCTGTGTTGTTAGGATGCCTGATCAGAGGCCTAAAATAACAGAAGTAGTTAGAATGATTGAGGAAGTCAAACAATTT

Ace file of the UniGene biog2_v2.0_unigene7456

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1930	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Nodulation receptor kinase, putative n=1 Tax=Ricinus communis RepID=B9T6G8_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	nodulation receptor kinase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	[Tau protein] kinase.	EC:2.7.11.26	-	0.0	81%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	81%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	tau-protein kinase activity	GO:0050321	Molecular Function	81%
Blast2go	receptor activity	GO:0004872	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: Distance to subject end: 38 aas, your sequence is shorter than subject: 71 - 340

Fln protein: EEVIDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVVRMPDQRPKITEVVRMIEEVKQF

Protein Length: 72

Fln nts: CGAAGAGGTAATTGATTTACCCAGATGGGTTCAGTCAGTGGTTCGAGAGGAGTGGACTGCCGAAGTATTTGATGTGGAATTGATGAGATATCAGAATATTGAAGAGGAGATGGTCCAGATGTTGCAGATTGCAATGGCCTGTGTTGTTAGGATGCCTGATCAGAGGCCTAAAATAACAGAAGTAGTTAGAATGATTGAGGAAGTCAAACAATTT

Fln Alignment:

biogeco2_mira_c1480___EEVIDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVVRMPDQRPKITEVVRMIEEVKQF
B8LN40_________________DEGIDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQLLQIAMACVAAVPDQRPRMQDVVKMIEDMRQF

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
46	66			33	0.997452
104	75		25		0.996473
106	75		25		0.996473
121		20		80	0.995493
175	33			66	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain