SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7455

Length: 551 nt

UniGene Fasta

>biog2_v2.0_unigene7455
ATAAGAGCTGGCTGATGAAGGTCTATTATCAACGTCGTCTATTCATGGGTTATTGTTGTATTAGCGCTGAGGTGCTTTATCTGATATTGTATGAGCTTGCAGAAAACCCATCAGATAGTGTGGTTAAGGTATTTATGGCAGCATTGAAGAAGAAGTCTCCATTGATGCTTCTAGGGTTGTTAGCTTTGCCAGGTTGGGCAATCAAACAAATTGTCAATCTCGTACAGATTAAGACAGCTGCAGAGACCTGTGTTCTATATGATCTGAATCGCAGCCAAAGGCCCTGAGATTGGTATTCAAGGAGGAGATTGACTGATTTTGCTTGCATATTTTTGGACCCTCTATCATTCATTTTCCAGGATATGGATACCTCTGCAAAATACAAATTCTTACCCTTACAGTACTATACCACAGTTAGTGTACCATATTTGTTTTATAAGCTTCTATGTGATTCCTGAATCTTCCATGAGATGTGTCCAGTGACCATTCTCTGAGTAAAATATTTGCATTTGTAAATGATATTTGTAACCCAATTAAAGGTTCATTTACTG

Ace file of the UniGene biog2_v2.0_unigene7455

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23110	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	phosphatidylinositol synthase PIS1 [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	phosphatidylinositol synthase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	CDP-diacylglycerol--inositol 3-phosphatidyltransferase.	EC:2.7.8.11	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Inositol phosphate metabolism	00562	77%
Blast2go	Glycerophospholipid metabolism	00564	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Phosphatidylinositol signaling system	04070	77%

Source	GOs	Term	Type	Identity
Blast2go	root development	GO:0048364	Biological Process	77%
Blast2go	auxin polar transport	GO:0009926	Biological Process	77%
Blast2go	cellular response to indolebutyric acid stimulus	GO:0071366	Biological Process	77%
Blast2go	phospholipid biosynthetic process	GO:0008654	Biological Process	77%
Blast2go	transporter activity	GO:0005215	Molecular Function	77%
Blast2go	CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	GO:0003881	Molecular Function	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	CDP-alcohol phosphatidyltransferase	IPR000462	-	0.0	-
Sma3	CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote	IPR014387	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ15

Fln msg: your sequence is shorter than subject: 95 - 229

Fln protein: KSWLMKVYYQRRLFMGYCCISAEVLYLILYELAENPSDSVVKVFMAALKKKSPLMLLGLLALPGWAIKQIVNLVQIKTAAETCVLYDLNRSQRP*

Protein Length: 96

Fln nts: ATAAGAGCTGGCTGATGAAGGTCTATTATCAACGTCGTCTATTCATGGGTTATTGTTGTATTAGCGCTGAGGTGCTTTATCTGATATTGTATGAGCTTGCAGAAAACCCATCAGATAGTGTGGTTAAGGTATTTATGGCAGCATTGAAGAAGAAGTCTCCATTGATGCTTCTAGGGTTGTTAGCTTTGCCAGGTTGGGCAATCAAACAAATTGTCAATCTCGTACAGATTAAGACAGCTGCAGAGACCTGTGTTCTATATGATCTGAATCGCAGCCAAAGGCCCTGA___GATTGGTATTCAAGGAGGAGATTGACTGATTTTGCTTGCATATTTTTGGACCCTCTATCATTCATTTTCCAGGATATGGATACCTCTGCAAAATACAAATTCTTACCCTTACAGTACTATACCACAGTTAGTGTACCATATTTGTTTTATAAGCTTCTATGTGATTCCTGAATCTTCCATGAGATGTGTCCAGTGACCATTCTCTGAGTAAAATATTTGCATTTGTAAATGATATTTGTAACCCAATTAAAGGTTCATTTACTG

Fln Alignment:

biogeco2_mira_c1478___KSWLMKVYYQRRLFMGYCCISAEVLYLILYELAENPSDSVVKVFMAAXXXXXXXXXXXXXXXPGWAIKQIVNLVQIKTAAETCVLYDLNRSQRP
A9NQ15_________________KSWLMKAYYQR-LFMGYCCVSAEVLYLILYELAESPSDSVVKVFMAALNQKSPLMLLGLLALPGWAIKQIVNVVQIKTAADTCVLYDLNRSQRP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
71	80		20		0.995493
121		50		50	1.0
288	50		50		1.0
294			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain