SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7444

Length: 525 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene7444
ATCGAGAGAATGTCGAGTAACAAGGATGAAGCAGCTCAAGCAGCGGCCGATCGGATCAAGGCTGCTGCATTGGGTGCTGCGAAAGGTCTCAGCCGTGCGCAGGCTGAACGAGCAGCGGCAGCAGCAGCAAGGAATGTGAATGCTTATGGCCAGAAAGAAGAAGGTCCAAGCCGATGGCAGGAACGGAAAGAAGCTAAGAGACAGATGTATTTGATGAGTACTGAGAAGGCTGTGAAATTGGGGGTTAGGAAGGATTTGAAACCCACAGCTCCATCTGGGAGTGCTGCCCAGCAATGCCAGAAATGTTACCAAACGGGCCATTGGACTTACGAATGCAAGAACGAGAGAGTTTACATGTCTCGCCCCTCCCGAACACAGCAGCTTAAAAATCCAAAGCTTAAGATGAAAATTTCTGTTTCGTACGAGCTGGACAACCCCGACAATTCTCAGAATTCGCTGGGCTTGCAGCATAGTCGGTGGGAGCGATCGACCTCCCTTAAGCTGGACATGAATTTCAAAAGCAAG

Ace file of the UniGene biog2_v2.0_unigene7444 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33629	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RZN5_RICCO	-	-	1.96182e-44	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	protein	-	-	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9C5

Fln msg: Distance to subject end: 122 aas, your sequence is shorter than subject: 172 - 294

Fln protein: MSSNKDEAAQAAADRIKAAALGAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQERKEAKRQMYLMSTEKAVKLGVRKDLKPTAPSGSAAQQCQKCYQTGHWTYECKNERVYMSRPSRTQQLKNPKLKMKISVSYELDNPDNSQNSLGLQHSRWERSTSLKLDMNFKSK

Protein Length: 173

Fln nts: ATCGAGAGA_-_ATGTCGAGTAACAAGGATGAAGCAGCTCAAGCAGCGGCCGATCGGATCAAGGCTGCTGCATTGGGTGCTGCGAAAGGTCTCAGCCGTGCGCAGGCTGAACGAGCAGCGGCAGCAGCAGCAAGGAATGTGAATGCTTATGGCCAGAAAGAAGAAGGTCCAAGCCGATGGCAGGAACGGAAAGAAGCTAAGAGACAGATGTATTTGATGAGTACTGAGAAGGCTGTGAAATTGGGGGTTAGGAAGGATTTGAAACCCACAGCTCCATCTGGGAGTGCTGCCCAGCAATGCCAGAAATGTTACCAAACGGGCCATTGGACTTACGAATGCAAGAACGAGAGAGTTTACATGTCTCGCCCCTCCCGAACACAGCAGCTTAAAAATCCAAAGCTTAAGATGAAAATTTCTGTTTCGTACGAGCTGGACAACCCCGACAATTCTCAGAATTCGCTGGGCTTGCAGCATAGTCGGTGGGAGCGATCGACCTCCCTTAAGCTGGACATGAATTTCAAAAGCAAG

Fln Alignment:

biogeco2_mira_c1452___NVNAYGQKEEGPSRWQERKEAKRQMYLMSTEKAVKLGVRKDLKPTAPSGSAAQQCQKCYQTGHWTYECKNERVYMSRPSRTQQLKNPKLKMKISVSYELDNPDNSQNSLGLQHSRWERSTSLKLDMNFKSK
D5A9C5_________________NVNAYGQKEEGPSRWQERKEAKRQMYLKSTEKAVKLGVRKDSKPTALSGSAAQQCQKCFQTGHWTHECKNERVYTSRPSRTQQLKNPKLKMKISVSYELGKTDNPQNILGSRHGRSELSTSLKLDMNYKIK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
151		20		80	0.995499

SSRs (tot: 1)

Start position	End position	Sequence	Length
397	408	TGC TGC TGC TGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain