SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7439

Length: 404 nt

UniGene Fasta

>biog2_v2.0_unigene7439
GCGATATTTGAAAAACAAATTGTGACTGTAACAGTAGATGAAGGGAAACCGACATCTTTTGGTAAAACATACTCTATGAAGGTTAGGGATGGTGAAACCTCTACGGCAGAGTCAGGATCAGATGTTGAAGATGTTATTTCTCCTATAAAAGGAAGGGATGCTGGGACTGCACGATTGACTCCTGTGTATGAAGAAGGCAAGATAACTGGATATTCTGGGAATGATGATGTTGGTCCATTAGTTGACAAGGCTGTTGATGGAGGTTGGAAAGGGAAGGAATCTGGGCGCAAAGTACCATATTCTAAAGAAACCTTGTTGTTCAAGGTTGAGAATGAATATCATCGAGAAGGTTCGTTTGGTTGGATAAGGGCAGTATTGGTGACTTTTCTTGTGAAGTGTTTAGC

Ace file of the UniGene biog2_v2.0_unigene7439

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7911	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphatidylinositol transporter, putative n=1 Tax=Ricinus communis RepID=B9RH84_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	sec14 cytosolic factor	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	70%
Blast2go	phosphatidylinositol transporter activity	GO:0008526	Molecular Function	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Cellular retinaldehyde binding/alpha-tocopherol transport	IPR001071	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3	Diguanylate phosphodiesterase, EAL domain	IPR001633	-	-
Sma3		IPR008273	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQR7

Fln msg: Distance to subject end: 137 aas, your sequence is shorter than subject: 134 - 621

Fln protein: AIFEKQIVTVTVDEGKPTSFGKTYSMKVRDGETSTAESGSDVEDVISPIKGRDAGTARLTPVYEEGKITGYSGNDDVGPLVDKAVDGGWKGKESGRKVPYSKETLLFKVENEYHREGSFGWIRAVLVTFLVKCL

Protein Length: 135

Fln nts: GCGATATTTGAAAAACAAATTGTGACTGTAACAGTAGATGAAGGGAAACCGACATCTTTTGGTAAAACATACTCTATGAAGGTTAGGGATGGTGAAACCTCTACGGCAGAGTCAGGATCAGATGTTGAAGATGTTATTTCTCCTATAAAAGGAAGGGATGCTGGGACTGCACGATTGACTCCTGTGTATGAAGAAGGCAAGATAACTGGATATTCTGGGAATGATGATGTTGGTCCATTAGTTGACAAGGCTGTTGATGGAGGTTGGAAAGGGAAGGAATCTGGGCGCAAAGTACCATATTCTAAAGAAACCTTGTTGTTCAAGGTTGAGAATGAATATCATCGAGAAGGTTCGTTTGGTTGGATAAGGGCAGTATTGGTGACTTTTCTTGTGAAGTGTTTAGC

Fln Alignment:

biogeco2_mira_c1443___AIFEKQIVTVTVDEGKPTSFGKTYSMKVRDGETSTAESGSDVEDVISPIKGRDAGTARLTPVYEEGKITGYSGNDD------VGPLVDKAVDGGWKGKESGRKVPYSKETLLFKVENEYHREGSFGWIRAVLVTFLV
B8LQR7_________________ARFARQIVTVTVD-GKTISHGKPHYTKAKGGDTSTAESGSDVDDVVSPKVYRGPGLARLTPVHEEGKVAWQANSSDGFLEYESVPMVDKAVDIGWKRKVYGENLPVSKDIFL-PVDDLKTPQGIIVQITAFFMAFIM

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
296		75		25	0.996473
297		75	25		0.996473
298	75		25		0.996473
299			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain