SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7370

Length: 519 nt

UniGene Fasta

>biog2_v2.0_unigene7370
GCAGCATTGACAAAGCTCAGAAGTAAGGGTATTATTGGGCTTAATGACAGGACCGTTGTTGTCAGTACTGCTCATGGGCTGAAGTTTACGCAATCCAAGATTGACTATCACTCAAAAGCGATTCATGACATGAAATGCGAATATGCAAACCCTCCCTTAACGGTAAAAGCAGATTTTTCTTCTGTTATGGATGTTTTGAAGAAGAAACTAGCTCTTCTTTGAGTCGTGGATACTGGTTATGGGGACAGGCGTTGGTGAACTCAACTATTTTCACAAGGCCAAAGTTTCTTATGCTTTCTCAAATGGTGCTCTGTGTTGGTTTATTTGACTCGCTTCTCTGTGGCTCTGCCGTATTCATTGAGCTATCAGCATATCGAGGGGGGATTTTTCCTTTCCGACATACGAGAGCCATTGTTTTCTGTTAATGTTAACGTCATGCTGAGGCAGTTCACTTCTCTTGGCTAATCATGGTATCGAGTTTAGCAGTAAAAATTTCACTGTTGAATCCTGTGANACGTG

Ace file of the UniGene biog2_v2.0_unigene7370

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1469	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Threonine synthase, putative n=2 Tax=fabids RepID=B9RK44_RICCO	-	-	74%
FL-Next	sp=Threonine synthase, chloroplastic; Solanum tuberosum (Potato).	-	-	76%
Blast2go	threonine synthase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Threonine synthase.	EC:4.2.3.1	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	87%
Blast2go	Vitamin B6 metabolism	00750	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	threonine biosynthetic process	GO:0009088	Biological Process	87%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	87%
Blast2go	threonine synthase activity	GO:0004795	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Threonine synthase	IPR004450	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9MT28

Fln msg: your sequence is shorter than subject: 74 - 519

Fln protein: AALTKLRSKGIIGLNDRTVVVSTAHGLKFTQSKIDYHSKAIHDMKCEYANPPLTVKADFSSVMDVLKKKLALL*

Protein Length: 75

Fln nts: GCAGCATTGACAAAGCTCAGAAGTAAGGGTATTATTGGGCTTAATGACAGGACCGTTGTTGTCAGTACTGCTCATGGGCTGAAGTTTACGCAATCCAAGATTGACTATCACTCAAAAGCGATTCATGACATGAAATGCGAATATGCAAACCCTCCCTTAACGGTAAAAGCAGATTTTTCTTCTGTTATGGATGTTTTGAAGAAGAAACTAGCTCTTCTTTGA___GTCGTGGATACTGGTTATGGGGACAGGCGTTGGTGAACTCAACTATTTTCACAAGGCCAAAGTTTCTTATGCTTTCTCAAATGGTGCTCTGTGTTGGTTTATTTGACTCGCTTCTCTGTGGCTCTGCCGTATTCATTGAGCTATCAGCATATCGAGGGGGGATTTTTCCTTTCCGACATACGAGAGCCATTGTTTTCTGTTAATGTTAACGTCATGCTGAGGCAGTTCACTTCTCTTGGCTAATCATGGTATCGAGTTTAGCAGTAAAAATTTCACTGTTGAATCCTGTGAaACGTG

Fln Alignment:

biogeco2_mira_c1279___ALTKLRSKGIIGLNDRTVVVSTAHGLKFTQSKIDYHSKAIHDMKCEYANPPLTVKADFSSVMD
Q9MT28_________________ALFKLRNSGVIAPTDRTVVVSTAHGLKFTQSKIDYHSKEIKDMECRFANPPVEVKADFGSVMD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
71	33	66			0.997464
73		66	33		0.997452
74	66		33		0.997452
75			33	66	0.997452
176		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain