SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7347

Length: 333 nt

UniGene Fasta

>biog2_v2.0_unigene7347
AGTGGGGCTTACTAAAACGGCACAATTTGGTGATTCTCAGCGGACGCAAGCATTTTTGCTTTATCACAGCGGAGAAAATACCAGGGAGTGGTGCTTGGAGCTCTGCAATACACTAGAATGGGTGTTTATACATTCATCTGCAAGTCATCAGGCGGCGCATGGAATGCAAAGCAGTATTCGGGCGATTTGGAGGGTTCGGCCGCCTCTACCTACGATTTGCAGCGGCAGCTCGTAAATGTGGCGCTCAATGCTGAAGGATCCGGTCCCGTTTCTTCCTCATTCTCATACGTTTCTCCTTCCTCGGCCGTTTTCCAGGTGATTATTGGGGGCGGT

Ace file of the UniGene biog2_v2.0_unigene7347

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14124	5/6
SustainPine v2.0	sp_v2.0_unigene26995	1/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S acidic ribosomal protein P3-1 n=2 Tax=Arabidopsis RepID=RLA31_ARATH	-	-	8.0e-11	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	60s acidic ribosomal protein p3	-	-	2.61989e-27	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	translational elongation	GO:0006414	Biological Process	2.61989e-27	79%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	2.61989e-27	79%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	2.61989e-27	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.61989e-27	79%
Blast2go	nucleus	GO:0005634	Cellular Component	2.61989e-27	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein 60S	IPR001813	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPS6

Fln msg: Distance to subject end: 49 aas, your sequence is shorter than subject: 72 - 121

Fln protein: MGVYTFICKSSGGAWNAKQYSGDLEGSAASTYDLQRQLVNVALNAEGSGPVSSSFSYVSPSSAVFQVIIGGG

Protein Length: 73

Fln nts: AGTGGGGCTTACTAAAACGGCACAATTTGGTGATTCTCAGCGGACGCAAGCATTTTTGCTTTATCACAGCGGAGAAAATACCAGGGAGTGGTGCTTGGAGCTCTGCAATACACTAGA_-_ATGGGTGTTTATACATTCATCTGCAAGTCATCAGGCGGCGCATGGAATGCAAAGCAGTATTCGGGCGATTTGGAGGGTTCGGCCGCCTCTACCTACGATTTGCAGCGGCAGCTCGTAAATGTGGCGCTCAATGCTGAAGGATCCGGTCCCGTTTCTTCCTCATTCTCATACGTTTCTCCTTCCTCGGCCGTTTTCCAGGTGATTATTGGGGGCGGT

Fln Alignment:

biogeco2_mira_c1229___MGVYTFICKSSGGAWNAKQYSGDLEGSAASTYDLQRQLVNVALNAEXXXXXXXXXXXXXXXXAVFQVIIGGG
A9NPS6_________________MGVYTFICKSSGGEWNAKQYSGDLEGSAASTFDLQRQLVNVALRSEGSGPVSSSFSYVSPSSAVFQVIIGGG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
199		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain