SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7292

Length: 1007 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene7292

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18094	1/20
SustainPine v2.0	sp_v2.0_unigene24952	5/20
SustainPine v2.0	sp_v2.0_unigene26497	14/20

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	40%
Blast2go	dek domain-containing chromatin associated protein	-	-	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor, NFYB/HAP3, conserved site	IPR003956	-	-
Sma3	Transcription factor, CBFA/NFYB, DNA topoisomerase	IPR003957	-	-
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	DEK, C-terminal	IPR014876	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: F6I550

Fln msg: Distance to subject end: 343 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 239 - 599

Fln protein: MAEVGVESAVPESSANGKVEVPTEVQEEAVTESQPFKGNGTETERVLEEASEPEGETNAKAVKEDAVKGAEDNGNDEDMSAGDGGEEKIKADEKSEGKVPKKRGRGRVSTDAKKSKAVEDERESKQGQEETPKESKKRKIRELSTPTLDRPSRERKTIERFVASNEKENVKEFTIEKGRGTLLKDIPNVVYKLSKRSRADENVRLLHAVLYGKRGKAFHLKNNILQFSGYVWGDNEEKL

Protein Length: 240

Fln nts: ATTTCCAGTAATGGCTGAGGATACATAGGGCGTTTTAGGTGGAGGATAATGGGAAGTTTGAGTTCGTGTTGCTATGAGCTTGGCAGCGGAGGGTTTTTATCGAGGGTTTTATGAGCGAACAAACACTTAGGGTTTTGGGACACTCGGGGTTTTAGTTAAAAGAAACTTGGTTTTCTTTATATTGAAGTCAGGAAAGTCTTTGGAGTCGCAGGTTCAGCACTCCTGCCTTGATATTTGGGGTTCCTGAAGAGCTTGATTCTAGAGGCTAGAAGCTTCGAACACTAACGGAG_-_ATGGCTGAGGTGGGCGTAGAGTCTGCCGTTCCAGAATCGTCTGCTAACGGGAAGGTTGAAGTACCCACGGAGGTGCAGGAGGAAGCTGTGACGGAATCACAACCATTTAAGGGCAATGGAACTGAAACTGAAAGAGTTCTAGAAGAAGCTAGCGAGCCAGAAGGAGAGACGAATGCGAAAGCTGTGAAAGAAGATGCTGTTAAGGGAGCGGAAGATAACGGGAATGACGAAGATATGAGTGCTGGGGATGGTGGCGAAGAGAAAATAAAGGCAGATGAAAAGAGCGAAGGAAAGGTGCCGAAGAAAAGAGGCAGGGGACGTGTTTCAACCGATGCGAAGAAATCTAAAGCTGTTGAAGATGAAAGAGAGAGTAAACAAGGACAAGAAGAAACACCAAAAGAATCAAAGAAGCGGAAAATCAGGGAGCTTTCTACTCCTACTCTCGATCGTCCCTCCAGGGAAAGAAAGACGATCGAGCGCTTCGTTGCGTCGAACGAAAAGGAAAACGTTAAAGAGTTCACCATTGAAAAGGGCAGAGGGACGCTGCTTAAAGACATCCCAAATGTGGTATACAAACTATCCAAAAGGAGTAGAGCTGATGAAAATGTGAGACTTCTTCATGCGGTTCTTTATGGGAAGCGTGGAAAAGCTTTTCATTTAAAAAATAACATCTTGCAGTTTTCAGGTTACGTGTGGGGTGACAATGAGGAAAAGCTT

Fln Alignment:

biogeco2_mira_c1089___TLTEMAEVGVESAVPESSANGKVEVPTEVQEEAVTES-------QPFKGNGTETERVLEEASEPEGET----NAKAVKEDAVKGAEDNGNDEDMSAGDGGEEKIKADEKSEGKVPKKRGRGRVSTDAKKSKAVEDERESKQGQEETPKESKKRKIRELSTP---TLDRPSRERKTIERFVASNEKENVKEFTIEKGRGTLLKDIPNVVYKLSKRSRADENVRLLHAVLYGKRGKAFHLKNNILQFSGYVWGDNEEK
F6I550_________________TLPEKMESVMEKKEEENNGVKEMEEDSKGDEKVETEALEAEKMDEDLAAKEEKENKELEEKEEPKTEVMEEDNVSKENEASEEKVESKENVEEKV--DGSKEKEKGGEIKDGKGPRKRGKGRSSGERVKDKV---------------KEVEEKKVKEPRTPAASTIARPVRERKSVERLVASIERDSTKEFHIEKGRGTALKDIPNVAYKLSKR-KSDDTFKLLHTILFGRRGKAFQVKNNISRFSGFVWHENEEK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
609		57		42	1.0
673	85			14	0.993533
753	16			83	0.994512
754		83		16	0.994512
755		83	16		0.994512
756	83		16		0.994512
774	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain