SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7287

Length: 489 nt

UniGene Fasta

>biog2_v2.0_unigene7287
ATAAGCAGATGTTTAAGATAAGTTATTACTCTTGCGAAGTATTTTGGTAAGATAAAAGCTTCTACGTTGTTTGCTGCTTTTACTCCTGCAAGGCTTTGAAATCTTAAGCGAGGATTATAGAATGCACTTGTGATAAATGGATTAAGAATTGGAAGGCATGTTGTGCCTGGATCCACATATATACTAGCAAGAATTGCAATGGCAGGAGGGGAATTGCTGGAACTGAAGTTTCGACTCAATGATGGTACGGACATTGGTCCTCACAAATATGCACCGGCTGCTACAATTGCCACTCTCAAGGAAAGCATACTTGCAAAGTGGCCACAAGGCAAAGAAAATGCTCCTAAAACAATAAATGACATGAAACTCATTAATGCGGGGAGAATCCTGGAGAACAATAAGACACTTGCAGACTCAAGAGTCCCTGTCGGTGAGGTCCCAGGTGGGGTCATTACAATGCTTGTTGTTGTACACCCTCAACTATTAAAC

Ace file of the UniGene biog2_v2.0_unigene7287

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27156	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	membrane-anchored ubiquitin-fold protein 6 [Arabidopsis thaliana] sp\|Q8GWJ6.1\|MUB6_ARATH RecName: Full=Membrane-anchored ubiquitin-fold protein 6; Short=AtMUB6; Short=Membrane-anchored ub-fold protein 6; Flags: Precursor dbj\|BAC43392.1\| unknown protein [A	-	-	7.0e-34	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Membrane-anchored ubiquitin-fold protein, HCG-1	IPR017000	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8B1

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 97 - 118

Fln protein: MAGGELLELKFRLNDGTDIGPHKYAPAATIATLKESILAKWPQGKENAPKTINDMKLINAGRILENNKTLADSRVPVGEVPGGVITMLVVVHPQLLN

Protein Length: 98

Fln nts: ATAAGCAGATGTTTAAGATAAGTTATTACTCTTGCGAAGTATTTTGGTAAGATAAAAGCTTCTACGTTGTTTGCTGCTTTTACTCCTGCAAGGCTTTGAAATCTTAAGCGAGGATTATAGAATGCACTTGTGATAAATGGATTAAGAATTGGAAGGCATGTTGTGCCTGGATCCACATATATACTAGCAAGAATTGCA_-_ATGGCAGGAGGGGAATTGCTGGAACTGAAGTTTCGACTCAATGATGGTACGGACATTGGTCCTCACAAATATGCACCGGCTGCTACAATTGCCACTCTCAAGGAAAGCATACTTGCAAAGTGGCCACAAGGCAAAGAAAATGCTCCTAAAACAATAAATGACATGAAACTCATTAATGCGGGGAGAATCCTGGAGAACAATAAGACACTTGCAGACTCAAGAGTCCCTGTCGGTGAGGTCCCAGGTGGGGTCATTACAATGCTTGTTGTTGTACACCCTCAACTATTAAAC

Fln Alignment:

biogeco2_mira_c1079___MAGGELLELKFRLNDGTDIGPHKYAPAATIATLKESILAKWPQGKENAPKTINDMKLINAGRILENNKTLADSRVPVGEVPGGVITMLVVVHPQLLN
D5A8B1_________________MAGGELLELKFRLYDGTDIGPHKYAPAATIATLKESILAKWPQGKANAPKTINDMKLINAGRILENNKTLADSRVPVGEVPGGVITMLVVVHPQLLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain