SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7276

Length: 561 nt

UniGene Fasta

>biog2_v2.0_unigene7276
GGAAGGGTAGCAAAGAATTCACTGCATCTATTCGATTGGAAATGAATTATGTTCCGGAGAAATTCAAGCTCTCGCCTTCCTTGACTGAACTTCTCGGCATTGAGGTGGATACAAGACCGAGAATCATTGCTGCACTTTGGCAGTATGTGAAAGCTAAGAAGCTTCAACATCCTTCTGATCCATCGGTCATTAACTGTGACCCACCATTGCAGAGGATTTTCGGGGGCGAGAAGATTAAGTTTTCTTTTATATCCCAGAAGCTTCCTCAGCATCTCTATCCTCCGCAGCCCATCCACTTAGAGCACAAGATAAGATTGTCAGGAAATAGTCCTGTTGGCCATGCTTGCTATGATGTTTTAGTTGATGTTCCTTTCCCATTGCAGAAGGAAATGAGTGCGTTTTTGGCTAATATTGAGAAGCACAAGGACATTGATGCCTGCGATGAAGCAATTTGTGTAGCAATTAAAAAGATTCATGAGCATCGTCGCAGAAGAGCATTTTATCTGGGCTTTAGTCAATCTCCTGTGGAGTTTATAAATGCTTTGATAGCCTCACAGAGCA

Ace file of the UniGene biog2_v2.0_unigene7276

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15368	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	SWI/SNF complex component SNF12 homolog n=2 Tax=Arabidopsis RepID=SNF12_ARATH	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	37%
Blast2go	chromatin remodeling complex subunit	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	root development	GO:0048364	Biological Process	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	SWIB/MDM2 domain	IPR003121	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRD4

Fln msg: STOP codon was not found. Distance to subject end: 92 aas, your sequence is longer than subject: 186 - 129

Fln protein: KGSKEFTASIRLEMNYVPEKFKLSPSLTELLGIEVDTRPRIIAALWQYVKAKKLQHPSDPSVINCDPPLQRIFGGEKIKFSFISQKLPQHLYPPQPIHLEHKIRLSGNSPVGHACYDVLVDVPFPLQKEMSAFLANIEKHKDIDACDEAICVAIKKIHEHRRRRAFYLGFSQSPVEFINALIASQS

Protein Length: 187

Fln nts: GGAAGGGTAGCAAAGAATTCACTGCATCTATTCGATTGGAAATGAATTATGTTCCGGAGAAATTCAAGCTCTCGCCTTCCTTGACTGAACTTCTCGGCATTGAGGTGGATACAAGACCGAGAATCATTGCTGCACTTTGGCAGTATGTGAAAGCTAAGAAGCTTCAACATCCTTCTGATCCATCGGTCATTAACTGTGACCCACCATTGCAGAGGATTTTCGGGGGCGAGAAGATTAAGTTTTCTTTTATATCCCAGAAGCTTCCTCAGCATCTCTATCCTCCGCAGCCCATCCACTTAGAGCACAAGATAAGATTGTCAGGAAATAGTCCTGTTGGCCATGCTTGCTATGATGTTTTAGTTGATGTTCCTTTCCCATTGCAGAAGGAAATGAGTGCGTTTTTGGCTAATATTGAGAAGCACAAGGACATTGATGCCTGCGATGAAGCAATTTGTGTAGCAATTAAAAAGATTCATGAGCATCGTCGCAGAAGAGCATTTTATCTGGGCTTTAGTCAATCTCCTGTGGAGTTTATAAATGCTTTGATAGCCTCACAGAGCA

Fln Alignment:

biogeco2_mira_c1050___LSPSLTELLGIEVDTRPRIIAALWQYVKAKKLQHPSDPSVINCDPPLQRIFGG-EKIKFSFISQKLPQH
A9NRD4_________________ISPAMQKFLGVSEIPRTKAIKKIWEYIKEKDLQDPANRREIVCDENLKSIFGGRERVGFLEISGLMKPH

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
300	66		33		1.0
364			33	66	1.0
441	50		50		1.0
451	75	25			0.996473
459			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain