SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7265

Length: 425 nt

UniGene Fasta

>biog2_v2.0_unigene7265
GCGTATTACATCCAAAATCTTATCAGTGTAATTTTCTGTGAAGCTGTGGCCATATATGGTGTTATTGTGGCAATCATTCTACAGACAAAGCTAGAGAGTGTTCCATCTACAAACATGTTTGCACCAGAGGCAATGCGAGCAGGATTTGCCATATTTGCATCTGGAATCATCGTGGGTTTTGCCAATCTAGTTTGCGGGGTTTGTGTTGGCATAATCGGAAGTAGCTGTGCACTTGCAGATGCCCAAAACTCTTCACTGTTTGTGAAAATTTTAGTTATTGAAATTTTTGGGAGTGCACTGGGGCTGTTTGGCGTGATTGTTGGCATTATAATGTCAGCCCAAGCTGCCTTTCCAACAAACGCTCAGTAAGGACACTGACAGATTTCAAGTGTGGCTTTGTAATCTTCTTTATGGTTACATTTTAA

Ace file of the UniGene biog2_v2.0_unigene7265

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15647	5/7
SustainPine v2.0	sp_v2.0_unigene17902	2/7

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar membrane ATPase subunit c'' [Citrus limon]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	vacuolar atp synthase 21 kda proteolipid subunit	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	hydrogen transport	GO:0006818	Biological Process	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	vacuole	GO:0005773	Cellular Component	94%
Blast2go	membrane	GO:0016020	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F0/V0 complex, subunit C	IPR002379	-	0.0	-
Sma3	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT77

Fln msg: your sequence is shorter than subject: 123 - 176

Fln protein: AYYIQNLISVIFCEAVAIYGVIVAIILQTKLESVPSTNMFAPEAMRAGFAIFASGIIVGFANLVCGVCVGIIGSSCALADAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAAFPTNAQ*

Protein Length: 124

Fln nts: GCGTATTACATCCAAAATCTTATCAGTGTAATTTTCTGTGAAGCTGTGGCCATATATGGTGTTATTGTGGCAATCATTCTACAGACAAAGCTAGAGAGTGTTCCATCTACAAACATGTTTGCACCAGAGGCAATGCGAGCAGGATTTGCCATATTTGCATCTGGAATCATCGTGGGTTTTGCCAATCTAGTTTGCGGGGTTTGTGTTGGCATAATCGGAAGTAGCTGTGCACTTGCAGATGCCCAAAACTCTTCACTGTTTGTGAAAATTTTAGTTATTGAAATTTTTGGGAGTGCACTGGGGCTGTTTGGCGTGATTGTTGGCATTATAATGTCAGCCCAAGCTGCCTTTCCAACAAACGCTCAGTAA___GGACACTGACAGATTTCAAGTGTGGCTTTGTAATCTTCTTTATGGTTACATTTTAA

Fln Alignment:

biogeco2_mira_c1018___QNLISVIFCEXXXXXXXXXXXXLQTKLESVPSTNMFAPEAMRAGFAIFASGIIVGFANLVCGVCVGIIGSSCALADAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAAFPTNAQ
A9NT77_________________KNLISVIFCEAVAIYGVIVAIILQTKLESVPSTNMFAPEAMRAGFAIFASGVIVGFANLVCGVCVGIIGSSCALADAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQAAFPTKVQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
118	50		50		1.0
138	50	50			1.0
253		80		20	0.995497
384	66		33		0.997459
401			33	66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain