SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7225

Length: 468 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene7225
AATCAAAGTTGAGACAGAGAAGGATGTCATGCATATAAACATCACGGCAGCTGTTTTTTCATAGTGTTATCATCTTTATTTTGATGCTGCTTTATTTCTTCATGGCTGATTGGTTCATTTGGATTCTCATCGTCTTCTTCTGTATAGGTGGAATTGAGGGAATGCATATTTGTTCAGTGGCTTTACTGTCCAGGTCATTTGGTCGCTATGCTGATGTGACAATAAAGGTTCCACTTGTGGGGGAGGTCTCACTCCTGTCTGTGATAGTTTTGCCCTTCTGTATAGCTTTTGCTGTTACTTGGGCTGCATATCAGCATGCATCCTATGCCTGGATTGGTCAAGATGTTCTAGGCATATCATTGATGATTACAGTTTTACAAATAGCTCGATTACCAAATATCAAGGTTGCAACCGTTCTATTAAGCTGTGCATTTGTGTATGATATTTTCTGGGTCTTCATATCACCTC

Ace file of the UniGene biog2_v2.0_unigene7225 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6528	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	signal peptide peptidase, putative [Oryza sativa Japonica Group] gb\|ABA93124.1\| signal peptide peptidase family protein, expressed [Oryza sativa Japonica Group] gb\|ABG22469.1\| signal peptide peptidase family protein, expressed [Oryza sativa Japonica Group	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	signal peptide peptidase-like 2b-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aspartic endopeptidases.	EC:3.4.23.-	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	77%
Blast2go	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Peptidase A22, presenilin signal peptide	IPR006639	-	-
Sma3	Peptidase A22B, signal peptide peptidase	IPR007369	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL80

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 143 aas, your sequence is shorter than subject: 155 - 539

Fln protein: SKLRQRRMSCI*TSRQLFFHSVIIFILMLLYFFMADWFIWILIVFFCIGGIEGMHICSVALLSRSFGRYADVTIKVPLVGEVSLLSVIVLPFCIAFAVTWAAYQHASYAWIGQDVLGISLMITVLQIARLPNIKVATVLLSCAFVYDIFWVFISP

Protein Length: 156

Fln nts: AATCAAAGTTGAGACAGAGAAGGATGTCATGCATATAAACATCACGGCAGCTGTTTTTTCATAGTGTTATCATCTTTATTTTGATGCTGCTTTATTTCTTCATGGCTGATTGGTTCATTTGGATTCTCATCGTCTTCTTCTGTATAGGTGGAATTGAGGGAATGCATATTTGTTCAGTGGCTTTACTGTCCAGGTCATTTGGTCGCTATGCTGATGTGACAATAAAGGTTCCACTTGTGGGGGAGGTCTCACTCCTGTCTGTGATAGTTTTGCCCTTCTGTATAGCTTTTGCTGTTACTTGGGCTGCATATCAGCATGCATCCTATGCCTGGATTGGTCAAGATGTTCTAGGCATATCATTGATGATTACAGTTTTACAAATAGCTCGATTACCAAATATCAAGGTTGCAACCGTTCTATTAAGCTGTGCATTTGTGTATGATATTTTCTGGGTCTTCATATCACCTC

Fln Alignment:

biogeco2_mira_c926___TSRQLFFHSVIIFILMLLYFFMADWFIWILIVFFCIGGIEGMHICSVALLSRSFGRYADVTIKVPLVGEVSLLSVIVLPFCIAFAVTWAAYQHASYAWIGQDVLGISLMITVLQIARLPNIKVATVLLSCAFVYDIFWVFISP
B8LL80_________________TKAAVFFILISSIFLMLLYWFMSDWFVWILIVLFCIGGIEGMHICSVALLSRSFGRFADMTIKVPIVGEVSLLSVIVLPFCIAFAVTWAANQHASYAWICQDVLGISLMITVLQIARLPNIKVAAVLLSCAFVYDIFWVFISP

SNPs (tot: 3)

Position	A %	C %	T %	Probability
128	83	16		0.994512
129		16	83	0.994512
131	16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain