SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7132

Length: 525 nt

UniGene Fasta

>biog2_v2.0_unigene7132
ATGGGGCAGTCTAAATTCGAAATCACCCGAAACCCTTGTGCGAGGAAGCAACTGCAGCAATGGCGGAGTACGATCTAACATCGAAGATTGCTCCCCATCTGGACCGCCATCTTGTTTTCCCACTTCTGGAGTTTCTGCAGGAGAAACAGCTCTATCCGGACGAACAAATTCTCAAGTCGAAGATCGACCTTCTCAGCAAAACCAACATGGTCGACTACGCCATGGACATCCACAAGAGCCTTTACCGCACCGAAGACGTTCCACAAGAAATGACAGACAGGCGCATTGAAGTAGTTGCAAGACTAAAGTCATTGGAAGAAATGGCTGCACCACTGATTAGTTTTCTACAGAATCCATCACTTGTTCAGGAGCTTCGTTCTGATAAACAATATAATCTCCAGATGCTGAATGATCGGTACCAGATTGGACCTAACCAGATAGAGGCGCTATACCAATATGCTAAGTTTCAGTTTGAATGCGGAAACTACTCGGGGGCAGCAGATTTCTTATACCAATATCGCACTT

Ace file of the UniGene biog2_v2.0_unigene7132

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18255	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit 6 n=3 Tax=Zea mays RepID=B6TRV3_MAIZE	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	91%
Blast2go	flower development	GO:0009908	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	signalosome	GO:0008180	Cellular Component	91%
Blast2go	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLS1

Fln msg: Distance to subject end: 254 aas, your sequence is shorter than subject: 155 - 409

Fln protein: MAEYDLTSKIAPHLDRHLVFPLLEFLQEKQLYPDEQILKSKIDLLSKTNMVDYAMDIHKSLYRTEDVPQEMTDRRIEVVARLKSLEEMAAPLISFLQNPSLVQELRSDKQYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADFLYQYRT

Protein Length: 156

Fln nts: ATGGGGCAGTCTAAATTCGAAATCACCCGAAACCCTTGTGCGAGGAAGCAACTGCAGCA_-_ATGGCGGAGTACGATCTAACATCGAAGATTGCTCCCCATCTGGACCGCCATCTTGTTTTCCCACTTCTGGAGTTTCTGCAGGAGAAACAGCTCTATCCGGACGAACAAATTCTCAAGTCGAAGATCGACCTTCTCAGCAAAACCAACATGGTCGACTACGCCATGGACATCCACAAGAGCCTTTACCGCACCGAAGACGTTCCACAAGAAATGACAGACAGGCGCATTGAAGTAGTTGCAAGACTAAAGTCATTGGAAGAAATGGCTGCACCACTGATTAGTTTTCTACAGAATCCATCACTTGTTCAGGAGCTTCGTTCTGATAAACAATATAATCTCCAGATGCTGAATGATCGGTACCAGATTGGACCTAACCAGATAGAGGCGCTATACCAATATGCTAAGTTTCAGTTTGAATGCGGAAACTACTCGGGGGCAGCAGATTTCTTATACCAATATCGCACTT

Fln Alignment:

biogeco2_mira_c624___MAEYDLTSKIAPHLDRHLVFPLLEFLQEKQLYPDEQILKSKIDLLSKTNMVDYAMDIHKSLYRTEDVPQEMTDRRIEVVARLKSLEEMAAPLISFLQNPSLVQELRSDKQYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADFLYQYRT
B8LLS1_________________MAEYDLTSKIAPHLDRHLVFPLLEFLQEKQLYPDDQILKSKIDLLSKTNMVDYAMDIHKSLYRTEDVPQDMTDRRVEVVARLKSLEEMAAPLISFLQNPSLVQELRSDKQYNLQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADFLYQYRT

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
241		66		33	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain