SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7126

Length: 847 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene7126 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13913	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	microtubule-associated protein, RP/EB family [Arabidopsis thaliana] dbj\|BAB11500.1\| microtubule-associated protein EB1-like protein [Arabidopsis thaliana] gb\|AAM61163.1\| microtubule-associated protein EB1-like protein [Arabidopsis thaliana] gb\|AED97615.1\|	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	microtubule-associated protein rp eb family member 1-like isoform 2	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	positive gravitropism	GO:0009958	Biological Process	73%
Blast2go	thigmotropism	GO:0009652	Biological Process	73%
Blast2go	microtubule binding	GO:0008017	Molecular Function	73%
Blast2go	phragmoplast	GO:0009524	Cellular Component	73%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	73%
Blast2go	microtubule organizing center	GO:0005815	Cellular Component	73%
Blast2go	preprophase band	GO:0009574	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%
Blast2go	spindle microtubule	GO:0005876	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Calponin homology domain	IPR001715	-	0.0	-
Sma3	EB1, C-terminal	IPR004953	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC63

Fln msg: Distance to subject end: 99 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 282 - 317

Fln protein: PYILHLGYWELCILAERHIHLLGILAERDYFLGHSRWLQQQHRDDGQCHFVGRNEILSWINSTLQLNLAKVEEAASGAVQCQMMDMIHPGVVPMHKVNFEAKTEYDMIQNYKLLQEVFSKLKIEKHVEVNKLVKGRPLDNLELLQWLKRYCDSATGGIMNSNYNPVERRCKGGKEVHRKGMSSMQCSSQNKGIGGVLKSVQSGSSSAIRRTDGSGAGPSGSKQGKHVSVPPGYVSVEHVQAVTEQVVELKLSVSNLEKERDFYFAKLRDIEILIQNEELEQF

Protein Length: 283

Fln nts: CCATACATACTGCATTTGGGTTATTGGGAGTTGTGCATTCTTGCAGAGAGGCACATACATTTGTTGGGCATTCTTGCAGAGAGAGATTACTTCCTTGGCCATTCGAGATGGCTGCAGCAGCAACATAGGGATGATGGACAGTGCCATTTTGTAGGCAGGAATGAGATTCTGTCATGGATCAACTCCACTCTGCAACTCAACCTCGCGAAAGTGGAGGAGGCAGCTTCAGGTGCAGTTCAATGCCAAATGATGGATATGATTCACCCAGGAGTTGTCCCTATGCACAAGGTGAATTTCGAGGCAAAGACAGAATACGACATGATCCAGAATTACAAATTGCTGCAAGAAGTATTTTCAAAATTAAAGATAGAGAAGCATGTAGAGGTTAATAAACTTGTTAAAGGTCGGCCGTTGGACAATCTGGAGCTTCTCCAGTGGTTGAAGCGGTATTGTGATTCTGCAACAGGTGGAATAATGAATAGCAATTATAATCCCGTGGAGAGAAGATGTAAAGGAGGAAAGGAAGTCCACAGAAAGGGAATGTCTTCAATGCAATGCTCATCACAGAACAAAGGCATTGGAGGAGTTTTAAAATCAGTTCAATCTGGCTCATCTTCAGCAATTCGACGCACAGATGGATCTGGGGCTGGCCCAAGTGGAAGTAAGCAAGGGAAGCATGTTTCAGTGCCTCCTGGCTATGTTTCCGTAGAACACGTTCAAGCTGTGACTGAACAGGTTGTAGAATTAAAGCTTTCTGTGAGCAATTTGGAGAAGGAAAGGGACTTCTACTTTGCTAAACTTCGAGATATAGAAATCCTAATTCAAAATGAAGAGTTGGAGCAGTTTC

Fln Alignment:

biogeco2_mira_c599___HFVGRNEILSWINSTLQLNLAKVEEAASGAVQCQMMDMIHPGVVPMHKVNFEAKTEYDMIQNYKLLQEVFSKLKIEKHVEVNKLVKGRPLDNLELLQWLKRYCDSATGGIMNSNYNPVERRCKGGKEVHRKGMSSMQCSSQNKGIGGVLKSVQSGSSSAIRRTDGSGAGPSGSKQGKHVSVPPGYVSVEHVQAVTEQVVELKLSVSNLEKERDFYFAKLRD
D5AC63_________________YFVGRNEILSWINSTLQLNLAKVEEAASGAVQCQMMDMIHPGVVPMHK-----------------------------HIEVNKLVKGRPLDNLELLQWLKRYCDSATGGTMNSNYNPVERRCKGGKEVHRKGMSSMQCSSQNKGIGGILKSVQSNSSSAIRRTDGFGAGPSGSKQGKHVSVPPGYVSVEHVQAVSEQVSELKLSVNNLEKERDFYFAKLRD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
627	33		66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain