SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7118

Length: 574 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene7118
GATTGTGTGTAAATGAGTCGTAAATTAAGANCGTAATGGATTCGATTGAGAGGACTACAGGCGAATGCCAGAGCCCTAGAATTTCATTTTCTCTCAACCTCTCTCAGAATGACAAGATTTCGCCGGAGAACAGGAGAAAGGAAGGTGTGGCCAATGTTCATTACGACACAGACTTTGAGTTTTGCGTTTTAAGCAATAACGATTACCGGCATTCATTTTCCGAAGAAGCTCTGCTATCTGTTGCCGATGAATTGTTTGTGGATGGAAAAATTCTGCCTGTAGACCGCCTTGTTGTATCCCAGCCTATATCCCCTGCGAGTCGTCTCGATCTTGAAAGCTCAAGGTGTCGGTCACCGGTTCGATCCGCTTCGTATCCACCACAAAGAACAAGCGGCTGTTTGGGAAATGTTACTTCTAAATCTTTGCCGCGTCATAAGCCGCCTAGTAAGTGGAAGGAAATCTTGCTTAAGCTGAGCAACAAAGAAAATGCAGAGAGCAGAAGAACATCCTCTAAGATAGTTGATCAAGATAGATCGCATAATACTGCGAAGAAACGGCCTTCTTCCCCAAGATA

Ace file of the UniGene biog2_v2.0_unigene7118 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4515	7/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	unknown [Picea sitchensis]	-	-	1.00731e-14	46%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR14

Fln msg: Distance to subject end: 303 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 179 - 510

Fln protein: MDSIERTTGECQSPRISFSLNLSQNDKISPENRRKEGVANVHYDTDFEFCVLSNNDYRHSFSEEALLSVADELFVDGKILPVDRLVVSQPISPASRLDLESSRCRSPVRSASYPPQRTSGCLGNVTSKSLPRHKPPSKWKEILLKLSNKENAESRRTSSKIVDQDRSHNTAKKRPSSPR

Protein Length: 180

Fln nts: GATTGTGTGTAAATGAGTCGTAAATTAAGAtCGTA_-_ATGGATTCGATTGAGAGGACTACAGGCGAATGCCAGAGCCCTAGAATTTCATTTTCTCTCAACCTCTCTCAGAATGACAAGATTTCGCCGGAGAACAGGAGAAAGGAAGGTGTGGCCAATGTTCATTACGACACAGACTTTGAGTTTTGCGTTTTAAGCAATAACGATTACCGGCATTCATTTTCCGAAGAAGCTCTGCTATCTGTTGCCGATGAATTGTTTGTGGATGGAAAAATTCTGCCTGTAGACCGCCTTGTTGTATCCCAGCCTATATCCCCTGCGAGTCGTCTCGATCTTGAAAGCTCAAGGTGTCGGTCACCGGTTCGATCCGCTTCGTATCCACCACAAAGAACAAGCGGCTGTTTGGGAAATGTTACTTCTAAATCTTTGCCGCGTCATAAGCCGCCTAGTAAGTGGAAGGAAATCTTGCTTAAGCTGAGCAACAAAGAAAATGCAGAGAGCAGAAGAACATCCTCTAAGATAGTTGATCAAGATAGATCGCATAATACTGCGAAGAAACGGCCTTCTTCCCCAAGATA

Fln Alignment:

biogeco2_mira_c573___QSPRISFSLNLSQNDKISPENRRKEGVANVHYDTDFEFCVLSNNDYRHSFSEEALLSVADELFVDGKILP--VDRLVVSQPISPASRLDLES----------------SRCRSPVRSASYPPQRTSGCLGNVTSKSLPRH-KPPSKWKEIL----LKLSNKENAESRRTSSKIVDQDRSHNTAKKRPSSPR
B8LR14_________________QSPRISFCHDIP-GDRVSPEKRKREEIID-NYSTEFEFCMVQNAT-NPTFLDQGMIS-ADELFLDGKLLPLHIPPQIPLQEMDDATPEDLENTTHAVSAEPEPEVKAETQSINVVQDVSLENVQSSADSGSNTIPVSPKSPKLSHRWKEIFKLGKLQVVTSKDSECQEIKKGEKKESHNHGFSLKQPLSPR

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
291			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain