SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7111

Length: 981 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene7111

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10776	7/8
SustainPine v2.0	sp_v2.0_unigene34924	1/8

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SRM4_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	cytochrome p450	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	64%
Blast2go	heme binding	GO:0020037	Molecular Function	64%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	64%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	64%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPD9

Fln msg: ERROR#3, very serious frame error, Separated hits, possible frame ERROR between 176 and 179, and overlapping frame ERROR between 427 and 427, Unexpected STOP codon at 3' end. Distance to subject end: 215 aas, your sequence is shorter than subject: 256 - 512

Fln protein: MDIGCLVWYSVVGITSAIIFFVWICxxRKTYYRLPPGPPGWPIVGNLFQLGKNPCESLFHLAEKYGPLMSLSLGMKITVVVSSPAMAKEVLKTHDHIFAGRIVNQVGRxxxHHKSSLVLCQYGSHWRMLRRISNTELFSVKRLEALRYLRRDQVNGMIHQIFEGSVKGSQCVNIGHTVFHSAFNLLSNMCFGTYMFDPHSGESEELKEAITKLMLLHTTPNLGDYFPFLQFLDLQGVFHQAVICRKRCMILLVNS*

Protein Length: 257

Fln nts: ATGGGAGATCCATCCAGAACCCAAGGGAAAGAAGAGATATGTAGTATTTCTCTCTGTTCTCTACAGTGGCCGGCTTCGACTGCATCTAATCAGTTTCT_-_ATGGATATTGGATGCCTGGTTTGGTATTCTGTGGTGGGGATCACCTCCGCCATCATATTTTTTGTTTGGATATGTTGxxxGAGGAAGACTTATTACAGGCTTCCTCCAGGGCCTCCAGGATGGCCTATCGTAGGAAATCTGTTTCAGTTGGGGAAGAATCCCTGCGAATCTCTCTTCCACCTCGCCGAGAAATATGGGCCTCTGATGTCTCTCTCTCTGGGAATGAAAATCACAGTGGTGGTCTCTTCTCCCGCCATGGCAAAGGAAGTTCTCAAAACCCATGACCACATCTTTGCAGGCCGGATTGTGAACCAAGTAGGCAGGTCxxxxxxCCATCACAAGTCCTCACTTGTTTTGTGTCAATATGGATCTCACTGGCGCATGCTCAGACGCATATCTAACACTGAACTCTTCTCTGTCAAGAGGTTGGAAGCTCTGCGATATCTCAGAAGAGATCAAGTAAATGGAATGATTCATCAGATTTTTGAAGGTTCCGTGAAGGGATCACAGTGTGTAAATATCGGACACACTGTGTTCCACTCCGCGTTTAATCTGTTAAGCAACATGTGTTTTGGCACATACATGTTCGATCCCCATTCTGGGGAATCTGAAGAGTTGAAAGAAGCTATTACGAAATTGATGTTGCTTCATACGACCCCAAATTTGGGGGATTATTTTCCCTTTCTTCAGTTCTTGGATCTACAGGGTGTATTTCATCAGGCGGTAATCTGCAGGAAAAGGTGCATGATATTATTGGTAAATTCATAGAGGATCGCCTGGCCACCAGAGGCAAAAGCAGCGACAGAAGTGACGATGGTAAGAAGGATCTCTTGGACGTTTTGCTGGACATGAGAGCGGTGAATTTACTGTCACTGATATCAGGGG

Fln Alignment:

biogeco2_mira_c544___MDIGCLVWYSVVGITSAIIFFVWICWxRKTYYRLPPGPPGWPIVGNLFQLGKNPCESLFHLAEKYGPLMSLSLGMKITVVVSSPAMAKEVLKTHDHIFAGRIVNQVGRSLSHHKSSLVLCQYGSHWRMLRRISNTELFSVKRLEALRYLRRDQVNGMIHQIFEGSVKGSQCVNIGHTVFHSAFNLLSNMCFGTYMFDPHSGESEELKEAITKLMLLHTTPNLGDYFPFLQFLDLQGVFHQAVICRKR
B8LPD9_________________MDIGRFVFYSLLGITSAIVYFVLDVWxKKTYCRLPPGPQGWPIVGNLFQLGKKPHESLFRLATKYGPLMSLSLGMKTTVVVSSPSMAKEVLKTHGHVFAGRIVTQAARSLSHDKSSFLLCQYGSRWRTLRRISNTELFSVKRLDALQDLRRVQVRGMIHQIFENSVKGSGCVNIGHIAFHSAFNLIGNMAFGKDMFDPHFRASEDLKDAISKLMVLHTAPNLADYFPCLQFLDLQGVYRNTGIYRKK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
539	50		50		1.0
589	33		66		0.997452
590	33		66		0.997452
591			33	66	0.997453
667			33	66	0.997452
668		33	66		0.997452
672		33		66	0.997453
683		33		66	0.997452
857	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain