SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7109

Length: 1170 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene7109 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6566	16/16

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphorylase n=1 Tax=Picea sitchensis RepID=A9NUV6_PICSI	-	-	0.0	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 35	IPR000811	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSL9

Fln msg: Overlapping hits, possible frame ERROR between 185 and 181, your sequence is shorter than subject: 254 - 365

Fln protein: DLNVQRKGEKIDIYSDKRDEETMDDWDLETLEKVVESKKTEYNQNKPTDIVCKYFLEAVxxxTIWLFWTCPNGGKECHYRHALPPGYVLKSQMKALLDEETQKISIEEEIENQRRQTKTTTPLNGDLFYEWKKKKTDQKEAELAAKRAERAKNDRMSGRELFLSDASLFVDDAEAYEKYNREDEEDRAKEVKKNPSPSTAETSTSGVTAEEEEQILAEDDDELDLDELDELEASIAKTSLETNGNSANPIKDC*

Protein Length: 255

Fln nts: ACGACTTGAATGTACAGAGAAAGGGTGAAAAGATTGACATATATAGTGATAAGCGAGATGAAGAAACTATGGACGATTGGGACCTGGAGACGCTTGAAAAGGTTGTAGAATCCAAGAAAACGGAATATAACCAGAACAAGCCAACGGATATTGTATGTAAATACTTTTTGGAAGCTGTGxxxxxxxxxACAATATGGTTGTTTTGGACTTGTCCCAATGGAGGAAAAGAATGTCACTATAGACATGCTCTGCCTCCTGGTTATGTATTAAAGTCTCAAATGAAGGCTTTGTTAGACGAAGAGACGCAGAAGATTTCAATTGAAGAAGAGATTGAAAATCAGAGACGACAAACAAAAACTACGACTCCCCTTAATGGTGACTTATTTTATGAATGGAAGAAGAAAAAGACAGACCAGAAGGAAGCTGAGCTTGCTGCCAAGAGAGCTGAGAGAGCGAAAAATGATCGCATGAGTGGGCGTGAATTATTCCTTTCGGATGCAAGCTTGTTTGTTGATGATGCCGAGGCTTACGAAAAGTACAATAGGGAAGATGAAGAAGATCGGGCCAAGGAGGTGAAGAAGAACCCAAGTCCTTCAACGGCAGAAACCTCAACTTCTGGGGTTACAGCTGAAGAAGAGGAGCAAATACTAGCTGAAGATGATGATGAATTGGACCTTGATGAATTGGACGAGCTAGAAGCTAGCATAGCAAAGACTTCTCTCGAGACAAATGGCAACTCTGCAAACCCAATAAAAGATTGTTAAAGTATCATTTGACACTTCTCTCTTGAAATTCCTTGTGAGATATGGCATTAGAAAAATGACATATATATGCAAAAGCGCCCAGTGTGGGTAGTCTTACAAGGAGGTGTCTGCTGCATAGCATGTTTGCAGGTTAAGGTGGTATATTGCTGCATAGAGTTTTAGCAGGTTGGTTCGATCTGTAGTTGTCTGACTATCATTGAAAATTGATCCATGTTTTCTGCGGGCACATGCAAAAGAGATTACTGCACAAGTTAGATGACAAGTTTTCTACTGTTATTTCTGATCACATTAGCTTGATTGAGAAAGCTTCTTCGTTACCAGTGAGCTCTTCTGATCAAGTTGATATTCTCGTCTGATGCGAGTTATAGTACACATTATCTATATATTGTGGTACTAATATATTTGTTT

Fln Alignment:

biogeco2_mira_c541___DLNVQRKGEKIDIYSDKRDEETMDDWDLETLEKVVESKKTEYNQNKPTDIVCKYFLEAVExKTIWLFWTCPNGGKECHYRHALPPGYVLKSQMKALLDEETQKISIEEEIENQRRQTKTTTPLNGDLFYEWKKKKTDQXXXXXXXXXXXXXKNDRMSGRELFLSDASLFVDDAEAYEKYNREDEEDRAKEVKKNPSPSTAETSTSGVTXXXXXXXXXXXXXXXXXXXXXXXXASIAKTSLETNGNSANPIKDC
C0PSL9_________________DLNVQRKGEKIDLYSDKRDEDTMDDWDLETLEKVVESKKNEYNQNKPTDIVCKYFLEAVExKQYGWFWTCPNGEKECHYRHALPPGYVLKSQMKALLEEETQKISIEEEIENQRRQTKTTTPLNGDLFYEWKKKKTDQKEAELAAKRAERAKNDRMSGRELFLSDASLFVDDAEAYEKYNREDEEDRAKEVKKNPSSSTAETSTSGVTAEEEEQILAEDDDELDLDELDELEASIAKTSLETNDNGANPIKNC

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
820			33	66	0.997471
830		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain