SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7108

Length: 518 nt

UniGene Fasta

>biog2_v2.0_unigene7108
ATGCTATTCAAGCTGCACTCAATGGGATTCGCTTACTGCCAGGGTTCAAAGGCATTGCCTTCCTCCAAACTTTCACCGTAGACCATTTTGAAAATGGCCTATGGGACTCAGGGGGCACATGCAATAGGACAGTGCCCTACAAAAAGAATGAAGTAAAGCTCAATGCTGTTGAGAAAGAGATGCACAAGATAGTTGTGGATGAGTTCAAGTATGGAACAGAGGAAGAGGCTCCCAATGGCTCAATTGCAAAGCTGGTTGATATAACATACTGCAGTCTACTTAGGCCAGACGGGCATCCAGGCAAATACAGGGACTCTAATTTTGTATCAAAGAGCAGAAGTACTCAACCTGTTCCCAATGACTGCCTGCATTGGTGCTTGCCTGGCCCAATCGACACATGGAATGAAATTTTACTGCAGATGATCCAGGATATTTAATCATTCCCCTTCATAGACATTATCTACACTTCCTTTGCCTTTATTCTATCTTCTATCTGAAATGGTTTTTACCTTGGCATT

Ace file of the UniGene biog2_v2.0_unigene7108

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1003	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	protein trichome birefringence-like 24 [Arabidopsis thaliana] gb\|AAN13062.1\| unknown protein [Arabidopsis thaliana] gb\|AEE84806.1\| protein trichome birefringence-like 24 [Arabidopsis thaliana]	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	protein	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Channel forming colicin, C-terminal cytotoxic	IPR000293	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	IPR003617	-	-
Sma3		IPR004253	-	-
Sma3		IPR010990	-	-
Sma3		IPR014754	-	-
Sma3	Transcription factor IIS, N-terminal	IPR017923	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPL1

Fln msg: your sequence is shorter than subject: 145 - 286

Fln protein: AIQAALNGIRLLPGFKGIAFLQTFTVDHFENGLWDSGGTCNRTVPYKKNEVKLNAVEKEMHKIVVDEFKYGTEEEAPNGSIAKLVDITYCSLLRPDGHPGKYRDSNFVSKSRSTQPVPNDCLHWCLPGPIDTWNEILLQMIQDI*

Protein Length: 146

Fln nts: ATGCTATTCAAGCTGCACTCAATGGGATTCGCTTACTGCCAGGGTTCAAAGGCATTGCCTTCCTCCAAACTTTCACCGTAGACCATTTTGAAAATGGCCTATGGGACTCAGGGGGCACATGCAATAGGACAGTGCCCTACAAAAAGAATGAAGTAAAGCTCAATGCTGTTGAGAAAGAGATGCACAAGATAGTTGTGGATGAGTTCAAGTATGGAACAGAGGAAGAGGCTCCCAATGGCTCAATTGCAAAGCTGGTTGATATAACATACTGCAGTCTACTTAGGCCAGACGGGCATCCAGGCAAATACAGGGACTCTAATTTTGTATCAAAGAGCAGAAGTACTCAACCTGTTCCCAATGACTGCCTGCATTGGTGCTTGCCTGGCCCAATCGACACATGGAATGAAATTTTACTGCAGATGATCCAGGATATTTAA___TCATTCCCCTTCATAGACATTATCTACACTTCCTTTGCCTTTATTCTATCTTCTATCTGAAATGGTTTTTACCTTGGCATT

Fln Alignment:

biogeco2_mira_c539___AIQAALNGIRLLPGFKGIAFLQTFTVDHFENGLWDSGGTCNRTVPYKKNEVKLNAVEKEMHKIVVDEFKYGTEEEAPNGSIAKLVDITYCSLLRPDGHPGKYRDSNFVSKSRSTQPVPNDCLHWCLPGPIDTWNEILLQMIQ
A9NPL1_________________ALRLAFKSINTSPDYKGLTFLRTFTPDHFENGRWDNGGTCERTVPYKNNEIVMEGMNTEMYKIQLEEFEKAAKDGAARGLKFRLIDTTWASLLRPDGHPGPYRYSHPFAKDKNAK-VQNDCLHWCLPGPIDAWNEFLLEMLK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
388	25			75	0.996475
392		75	25		0.996473
393			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain