SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7083

Length: 517 nt

UniGene Fasta

>biog2_v2.0_unigene7083
GAGAAGTGAAACATTGCAGAAGCAACTTTCAGACATTGAAAACATTAGTGAAGAGTTTATAGATTACATTGTGAAGCAGTACATGGAGGATATTGAGAGAGGTGCAGACCTGAGGGACGGCGTGTGGCCGGTTAGGGTTCCAACATATTCTCTATCCAAAGTGATTTTGAATGCATACACTCGTCTTCTGGCTCGGGATCTGAAAGGAAAGGCATGTGTTAACAGCGTGCACCCTGGTTACGTCAGGACTTCCATGACATTCAACACTGGCGATATTTCATCTGTTCAAGGAGCAGAAAATGTGGTGAGAGTGGCCTTGCTCCCACCCGGTGGACCTACTGGCCAAAACTTTCTGGAAACAAAAGTTGCTCACTTCTGAAGTTTTTATGCTCTGTTAGATTGAGTGTAAGAGAATTTATCAGAAAAGTTTTCCTAGGCTAGATTGAACTGAAGCTCATATTTGTCCTGAAATAATGAGATCTTGATCTTTATGCGTATTCCAAATTATAAACATATT

Ace file of the UniGene biog2_v2.0_unigene7083

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6360	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	short-chain dehydrogenase/reductase protein-like [Oryza sativa Japonica Group] gb\|EAZ23958.1\| hypothetical protein OsJ_07684 [Oryza sativa Japonica Group] dbj\|BAG87881.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	neomenthol dehydrogenase-like isoform 2	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	63%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	63%
Blast2go	binding	GO:0005488	Molecular Function	63%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P0D5

Fln msg: your sequence is shorter than subject: 126 - 322

Fln protein: RSETLQKQLSDIENISEEFIDYIVKQYMEDIERGADLRDGVWPVRVPTYSLSKVILNAYTRLLARDLKGKACVNSVHPGYVRTSMTFNTGDISSVQGAENVVRVALLPPGGPTGQNFLETKVAHF*

Protein Length: 127

Fln nts: GAGAAGTGAAACATTGCAGAAGCAACTTTCAGACATTGAAAACATTAGTGAAGAGTTTATAGATTACATTGTGAAGCAGTACATGGAGGATATTGAGAGAGGTGCAGACCTGAGGGACGGCGTGTGGCCGGTTAGGGTTCCAACATATTCTCTATCCAAAGTGATTTTGAATGCATACACTCGTCTTCTGGCTCGGGATCTGAAAGGAAAGGCATGTGTTAACAGCGTGCACCCTGGTTACGTCAGGACTTCCATGACATTCAACACTGGCGATATTTCATCTGTTCAAGGAGCAGAAAATGTGGTGAGAGTGGCCTTGCTCCCACCCGGTGGACCTACTGGCCAAAACTTTCTGGAAACAAAAGTTGCTCACTTCTGA___AGTTTTTATGCTCTGTTAGATTGAGTGTAAGAGAATTTATCAGAAAAGTTTTCCTAGGCTAGATTGAACTGAAGCTCATATTTGTCCTGAAATAATGAGATCTTGATCTTTATGCGTATTCCAAATTATAAACATATT

Fln Alignment:

biogeco2_mira_c452___RSETLQKQLSDIENISEEFIDYIVKQYMEDIERGADLRDGVWPVRVPTYSLSKVILNAYTRLLARDLKGKACVNSVHPGYVRTSMTFNTGDISSVQGAENVVRVALLPPGGPTGQNFLETKVAHF
A9P0D5_________________RSETLQRQLSDIENISEEVIDCTVKQFMEDIERGADLRDSVWPVRLPTYSLSKVALNAYTRLLARDLNGKACVNSVHPGYVRTSMTFDTGDISSVEGAEYVVRVALLPPSGPSGQNFLRAQIAPF

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
167	50			50	1.0
194	50			50	1.0
200			50	50	1.0
253	25			75	1.0
257		12		87	0.992554
267		87		12	0.992554
270		50		50	1.0
289		66	33		1.0
324		83		16	0.994512
342	40			60	1.0
364	66	33			0.997476
367	33		66		0.997453

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain