SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7048

Length: 1065 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene7048

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25617	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Male-specific transcription factor M88B7.2 n=1 Tax=Marchantia polymorpha RepID=Q6J3Q5_MARPO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC32

Fln msg: your sequence is shorter than subject: 235 - 351

Fln protein: QSDGDNLAEPTSVVPVRSQGTNQLTLSYQGEVYVFDMVAPEKVQQVLLLLGGGEIPNSMAGMPIATLHHQKGLSDVSHRLNQPQRLASLTRFREKRKERCFDKKIRYTVRKEVAQRMQRNKGQFTSYKSDSKDLVSAGHKWDSAEGWAPNTNGTQQEAVCLHCGTGERSTPMMRRGPVGPRTLCNACGLVWANKGVLRDLSKSSTSLGSQEQSQSSHEQNDGDQEARRLSWVNN*

Protein Length: 236

Fln nts: TCAATCAGATGGCGACAATCTCGCAGAACCCACGTCGGTTGTCCCTGTACGCAGTCAGGGAACAAATCAACTTACACTCTCATATCAAGGCGAGGTCTATGTCTTTGATATGGTGGCACCAGAGAAGGTACAGCAAGTGCTTTTATTGTTGGGGGGTGGGGAAATACCAAATAGCATGGCTGGCATGCCCATTGCCACTCTTCATCATCAGAAGGGCTTGTCAGATGTTTCACATCGTTTAAATCAACCACAAAGACTTGCATCTCTTACAAGATTTCGAGAAAAGCGTAAGGAACGTTGTTTTGATAAAAAGATCCGTTACACTGTACGCAAAGAGGTTGCTCAAAGGATGCAACGCAACAAAGGTCAATTTACATCATACAAGTCTGATTCTAAGGATTTAGTCTCTGCTGGACATAAGTGGGATTCAGCTGAGGGTTGGGCTCCAAACACTAATGGGACACAACAAGAAGCTGTATGCCTTCATTGTGGCACTGGGGAGAGATCTACTCCAATGATGCGGCGTGGGCCAGTTGGACCAAGGACACTTTGCAATGCCTGTGGACTAGTGTGGGCCAACAAGGGAGTGCTGAGGGACCTTTCAAAAAGTTCCACATCTTTGGGAAGCCAGGAGCAATCGCAGAGCTCACATGAACAGAATGATGGGGACCAGGAAGCCAGGAGACTGAGCTGGGTGAATAATTGA___GTTACATTTCCTCCACCTTTTGTCCATAGTCTGTCATGACATACATGACAGAATCGCTTCTCTGTCGGTTCTGTTCTTATAGAAAATTGAAGAAGCACTTTAATACACTTCTGTTCATAAGGTGCTGCTTTAAAATTTTCCAGCAAGTGCTGGTGATGATCTTCTGACATCGGTTATTCTGTACAACTATTTTTGTATACAGTAGAATAATTATTCAGTCAGAAAGAGAGCATATCATATATGGGAAAAATATAATTATTTTATAAGCTTCCATGTGGCCAAATGTGGTCCCTGCGACTCTAATACAGACATTAACAATTAGAAATACCCAATTAGGGAGATGATCACACAAGTCATTA

Fln Alignment:

biogeco2_mira_c324___QSDGDNLAEPTSVVPVRSQGTNQLTLSYQGEVYVFDMVAPEKVQQVXXXXXXXEIPNSMAGMPIATLHHQKGLSDVSHRLNQPQRLASLTRFREKRKERCFDKKIRYTVRKEVAQRMQRNKGQFTSYKSDSKDLVSAGHKWDSAE-GWAPNTNGTQQEAVCLHCGTGERSTPMMRRGPVGPRTLCNACGLVWANKGVLRDLXXXXXXXXXXXXXXXXHEQND---GDQEARR
D5AC32_________________QSDGDNLGEPQSVVPVRSQGTNQLTLSYQGEVYVFDMVAPEKVQQVLLLLGGREIPNSMAGMPIASLHHQKGLSDVSHRLNQPQRLASLTRFREKRKERCFDKKIRYTVRKEVAQRMQRNKGQFTSYKADSKDLISAGHKWDPSEGGWTPNTNGTQQEAVCLHCGTGERSTPMMRRGPVGPRTLCNACGLVWANKGVLRDLSKSTTSLGSQEQSQSSHEQNDGGPGSQETER

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
695		66	33		0.997452
696			33	66	0.997452
879	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain