SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7047

Length: 860 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene7047 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17350	9/10
SustainPine v2.0	sp_v2.0_unigene77701	1/10

Source	Descriptions	Term	Type	Identity
AutoFact	Caltractin n=1 Tax=Atriplex nummularia RepID=CATR_ATRNU	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	caltractin	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	88%
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	88%
Blast2go	cell tip growth	GO:0009932	Biological Process	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
482		20		80	0.995493
528	75		25		0.996476
562	75		25		0.996473
604	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain