SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene7015

Length: 759 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene7015 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27843	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	PLE, putative n=1 Tax=Ricinus communis RepID=B9S7E4_RICCO	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	56%
Blast2go	microtubule-associated protein 65-7	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	microtubule nucleation	GO:0007020	Biological Process	75%
Blast2go	positive regulation of microtubule polymerization	GO:0031116	Biological Process	75%
Blast2go	microtubule binding	GO:0008017	Molecular Function	75%
Blast2go	mitochondrion	GO:0005739	Cellular Component	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%
Blast2go	preprophase band	GO:0009574	Cellular Component	75%
Blast2go	phragmoplast	GO:0009524	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Domain of unknown function DUF296	IPR005175	-	-
Sma3	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
425	33		66		0.997452
441		20		80	0.995493
442	80	20			0.995493
448		25	75		0.996473
449	33	33	33		0.997753
539	33	66			0.997452
566		25		75	0.996478
582		33		66	0.997452
606		20		80	0.995497
608			80	20	0.995499
630			75	25	0.996475
716	66	33			0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain