SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6429

Length: 824 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6429

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16890	55/69
SustainPine v2.0	sp_v2.0_unigene30809	1/69
SustainPine v2.0	sp_v2.0_unigene60340	7/69
SustainPine v2.0	sp_v2.0_unigene82398	5/69
SustainPine v2.0	sp_v2.0_unigene82961	1/69

Source	Descriptions	Term	Type	Identity
AutoFact	Low molecular weight heat-shock protein n=7 Tax=Pinaceae RepID=Q40935_PSEMZ	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	low molecular weight heat-shock protein	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
341			25	75	0.996473
342			25	75	0.996473
346	75		25		0.996473
352		75	25		0.996473
423	20			80	0.995493
428		80	20		0.995493
519		80		20	0.995493
624	80			20	0.995493
688		12	87		0.992554
710		93		6	0.999364
725		16		83	1.0
729	16		83		1.0
730		17		82	1.0
732	82			17	1.0
733		17		82	1.0
734			17	82	1.0
739		82		17	1.0
769	4			81	1.0
803			27	72	1.0
804	11			88	0.991528
805	42	42			1.0
806	14	71		14	0.984337
807	20	40	20	20	0.994159

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain