SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6422

Length: 824 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene6422 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24439	16/27
SustainPine v2.0	sp_v2.0_unigene82178	9/27
SustainPine v2.0	sp_v2.0_unigene82864	1/27

Source	Descriptions	Term	Type	Identity
AutoFact	Low molecular weight heat-shock protein n=7 Tax=Pinaceae RepID=Q40935_PSEMZ	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	low molecular weight heat-shock protein	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
406	33		66		0.997452
463	33		66		0.997452
497		33		66	0.997452
506		33		66	0.997452
537		50		50	1.0
616		66		33	0.997452
623	25		75		0.996473
665	25		75		0.996473
677	75		25		0.996473
689	75		25		0.996473
697	75		25		0.996473
722		44		55	1.0
734	44			55	1.0
740	88	11			0.923564
741	88	11			0.923564
742		11		88	0.923564
752	50			50	1.0
771		50		50	1.0
779		50		50	1.0
782		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain