SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6409

Length: 843 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6409

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14022	53/108
SustainPine v2.0	sp_v2.0_unigene24214	33/108
SustainPine v2.0	sp_v2.0_unigene30564	10/108
SustainPine v2.0	sp_v2.0_unigene83029	2/108
SustainPine v2.0	sp_v2.0_unigene83143	5/108

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Low molecular weight heat-shock protein n=7 Tax=Pinaceae RepID=Q40935_PSEMZ	-	-	9.80909e-45	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	low molecular weight heat-shock protein	-	-	0.0	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stress	GO:0006950	Biological Process	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
122		11		88	0.923564
145			10	90	0.90298
146	90		10		0.90298
147			10	90	0.90298
178		10		90	0.90298
189	10		90		0.90298
191		10		90	0.90298
335	10			90	0.90298
337			10	90	0.90298
338	90		10		0.90298
339		90	10		0.90298
340	10		90		0.90298
356		12	87		0.992554
358	12		87		0.992554
383		85	14		0.993533
401	83		16		0.994512
446		20		80	0.995493
449		20	80		0.995493
455	20		80		0.995493
456		80	20		0.995493
458	25		75		0.996473
461	80		20		0.995493
482		20		80	0.995493
491		80		20	0.995493
495	80		20		0.995493
497		33		66	0.997452
641	33		66		0.997452
654	66		33		0.997452
699			25	75	1.0
706		25		75	1.0
720	28	71			1.0
721	28			71	1.0
726		28		71	1.0
728	28	71			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain