SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene6396

Length: 1427 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene6396

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7209	3/38
SustainPine v2.0	sp_v2.0_unigene16987	34/38

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF581 domain containing protein	-	-	1.0e-22	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	uncharacterized protein	-	-	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF581	IPR007650	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT09

Fln msg: your sequence is longer than subject: 219 - 166

Fln protein: MLLSFLWGGRLQGGELVFLSGPHFGFRSGKFRGIQRIFCIFFCVGTSVHINKMLLGKRARPTMRRTTSMSSLGSDSCLELNPKEKQRPSQDCSSIKGMTLGETAQGQAVAMGVPIKKGIWWPLNGFGFPRPNRRKNSEPAHFLHACFLCKRRLVPGRDIYMYRGDSAFCSIECRHQQIVLDERKEKRSVIAMKKESVPSNQHQNTSNQGSHSETAAAA*

Protein Length: 220

Fln nts: CGGTGTAAACGCTTATATGGACTATGTGGTAGTATCCTGATTGGGGGCTCTATTCAATTCAATAGCAATAAGAGGAAGTTGGGTATTGTTTTATCAGAGTCCCATTTACTGTTTTAGGGGCTTTAGGTAAAGTAGTTTGCAAGCTATATATTATTACCTCAGGGTCTCTGGGAGTGTTCAGTATCTGAATAAGTGTTATAGTTGCAGAAATTGGGCTGTTCTTTAATGCCTGCAGAGTTATTTGTTAGGGAATTCTTAATTTGGATGTAGTTTTCTGAATGCCCACATTAGATTTTATCACTGAATCCAATGTGGGCACTCGCAGAAATTTTACTTAAATCACTGCACGGTTTATCAGAGTTTTTGCGGTAGGCTGCGGCAGTGT_-_ATGCTGCTATCGTTTTTGTGGGGCGGGCGTCTGCAAGGCGGAGAACTTGTATTTCTATCTGGTCCTCACTTTGGTTTCAGATCAGGGAAATTCAGAGGAATTCAGAGAATTTTCTGCATCTTTTTTTGTGTGGGTACATCTGTACATATAAACAAGATGCTGCTTGGAAAGCGAGCGAGGCCTACAATGAGAAGAACTACAAGCATGTCATCGCTTGGTTCAGATTCTTGTCTTGAGCTGAATCCCAAAGAGAAGCAGAGACCATCTCAGGATTGCTCCTCAATAAAGGGCATGACCCTAGGAGAGACTGCACAAGGGCAAGCTGTGGCAATGGGTGTACCAATCAAAAAGGGCATTTGGTGGCCATTGAACGGCTTTGGTTTTCCTAGGCCTAATAGAAGAAAGAATTCAGAGCCTGCCCACTTCCTGCATGCGTGTTTTCTCTGCAAACGCCGGCTGGTCCCTGGCAGGGACATCTACATGTACAGGGGTGACAGTGCATTCTGTAGCATTGAATGTCGGCACCAGCAAATTGTTTTAGATGAACGCAAAGAGAAACGCTCTGTGATCGCCATGAAAAAAGAATCTGTGCCCTCAAATCAGCATCAGAACACCAGTAATCAGGGTTCCCATTCTGAGACCGCTGCAGCAGCCTAG___CGCAGATGGTGTTTATGAGGACGCCAAGTAGTCCTTTATGTGCTCTCTATTATTGTTTATTTGATAAGAATGGGTTCAGTGATCTAAACGCTGTAGCAGGGATAAGAATTAAGATCATGCAATCTTTATATGATGCTGTTTATCAGGCGCTTCTGTTGCTGATTGAATATGTAATGGCAGTTAACCTGTTCTTTCATAATTGAGTGTTATGGGTTTTGGCATCTTTACGAATTGGATCTGAGCTGTTATGGCCATGTTTTCCAGTCTCATTATCAAACTTCCTTCTTTTGTACACACAGGCAGTTTTAGCTAACTGCGAAGTGTAAAGAACAAAGGATTGTCGAATCGAAACCATATCAAATTTATCGTGATTATGATCTAATCC

Fln Alignment:

Contig6396___MLLGKRARPTMRRTTSMSSLGSDSCLELNPKEKQRPSQDCSSIKGMTLGETAQGQAVAMGVPIKKGIWWPLNGFGFPRPNRRKNSEPAHFLHACFLCKRRLVPGRDIYMYRGDSAFCSIECRHQQIVLDERKEKRSVIAMKKESVPSNQHQNTSNQGSHSETAAAA
A9NT09_________________MLLGKRARPTMRRTTSMSSLGSDSSLELNPKEKQRPSQDCSSIKGMALGETAQGQTVAMGVPNKKGIWWPLNGFGFPRPNRRKNSEPAHFLHACFLCKRRLVPGRDIYMYRGDSAFCSIECRHQQIVLDERKEKRTVIVMKKESVPSNQHQNSGNQGSHSETAAAA

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
393		75		25	0.996473
394	25			75	0.996473
734	75			25	0.996473
735	75		25		0.996473
736	75		25		0.996473
737	75		25		0.996473
905	12		87		0.992554
907		87	12		0.992554
943	87		12		0.992554
1047	12		87		0.992554
1161		80		20	0.995493
1169	20	80			0.995493
1200	10		90		0.90298
1202			10	90	0.90298
1204		90	10		0.90298
1205		10		90	0.90298
1214	90		10		0.90298
1225	11		88		0.923564
1269		16		83	0.994512
1271		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain